Mir-218-P2

MirGeneDB ID

Sha-Mir-218-P2

Family name

MIR-218 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-218-P4

Orthologues

Aca-Mir-218-P2 Ami-Mir-218-P2 Bta-Mir-218-P2 Cfa-Mir-218-P2 Cja-Mir-218-P2 Cli-Mir-218-P2 Cmi-Mir-218-P2 Cpi-Mir-218-P2 Cpo-Mir-218-P2 Dno-Mir-218-P2 Dre-Mir-218-P2 Eca-Mir-218-P2 Ete-Mir-218-P2 Gga-Mir-218-P2 Gja-Mir-218-P2 Gmo-Mir-218-P2 Hsa-Mir-218-P2 Laf-Mir-218-P2 Lch-Mir-218-P2 Loc-Mir-218-P2 Mal-Mir-218-P2 Mdo-Mir-218-P2 Mml-Mir-218-P2 Mmr-Mir-218-P2 Mmu-Mir-218-P2 Mun-Mir-218-P2 Neu-Mir-218-P2 Oan-Mir-218-P2 Ocu-Mir-218-P2 Pab-Mir-218-P2 Pbv-Mir-218-P2 Pma-Mir-218-o2 Rno-Mir-218-P2 Spt-Mir-218-P2 Sto-Mir-218-P2 Tgu-Mir-218-P2 Tni-Mir-218-P2 Xla-Mir-218-P2a Xla-Mir-218-P2b Xtr-Mir-218-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL864864.1: 3545632-3545695 [-] UCSC Ensembl

Seed

UGUGCUU

Precursor
(pre-Mir +30nt flank)

GCCGUAAUGAUCAUGUGGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGGUUGUGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGACA

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Structure

        10          20        30        40        50        60 
GCCGUAAUGAUCAUGUG--|  A   U      U         CU        GGUUGUGAG 
                   GCG GAU UUCUGU GUGCUUGAU  AACCAUGU         G
                   CGC CUG AAGGUA CACGAACUG  UUGGUACA         U
ACAGUACGACAUCUUUCGA^  A   C      C         UC        AAAUGAGUA 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts ranging from +1 to +4 on both arms but this represents the highest mature form across most vertebrates.

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-218-P2_5p

mirBase accession

None

Sequence

0- UUGUGCUUGAUCUAACCAUGU -21

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Star sequence

Sha-Mir-218-P2_3p* (predicted)

mirBase accession

None

Sequence

43- AUGGUUCUGUCAAGCACCAUG -64

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