Mir-218-P2

MirGeneDB ID

Rno-Mir-218-P2

Family name

MIR-218 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-218a-1

Paralogues

Rno-Mir-218-P4

Orthologues

Aca-Mir-218-P2 Ami-Mir-218-P2 Bta-Mir-218-P2 Cfa-Mir-218-P2 Cja-Mir-218-P2 Cli-Mir-218-P2 Cmi-Mir-218-P2 Cpi-Mir-218-P2 Cpo-Mir-218-P2 Dno-Mir-218-P2 Dre-Mir-218-P2 Eca-Mir-218-P2 Ete-Mir-218-P2 Gga-Mir-218-P2 Gja-Mir-218-P2 Gmo-Mir-218-P2 Hsa-Mir-218-P2 Laf-Mir-218-P2 Lch-Mir-218-P2 Loc-Mir-218-P2 Mal-Mir-218-P2 Mdo-Mir-218-P2 Mml-Mir-218-P2 Mmr-Mir-218-P2 Mmu-Mir-218-P2 Mun-Mir-218-P2 Neu-Mir-218-P2 Oan-Mir-218-P2 Ocu-Mir-218-P2 Pab-Mir-218-P2 Pbv-Mir-218-P2 Pma-Mir-218-o2 Sha-Mir-218-P2 Spt-Mir-218-P2 Sto-Mir-218-P2 Tgu-Mir-218-P2 Tni-Mir-218-P2 Xla-Mir-218-P2a Xla-Mir-218-P2b Xtr-Mir-218-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr14: 66923105-66923168 [-] UCSC Ensembl

Seed

UGUGCUU

Precursor
(pre-Mir +30nt flank)

GGUGUAGUGAUAACGUAGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGCUUGCGAGGUAUGAGUAAAACAUGGUUCCGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGACA

Get precursor sequence

Structure

        10          20        30        40        50        60 
GGUGUAGUGAUAACGUA--|  A   U      U         CU        GCUUGCGAG 
                   GCG GAU UUCUGU GUGCUUGAU  AACCAUGU         G
                   CGC CUG AAGGUA CACGAACUG  UUGGUACA         U
ACAGUACGACAUCUUUCGA^  A   C      C         CC        AAAUGAGUA 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

Comment

There are Dicer cuts ranging from +1 to +4 on both arms but this represents the highest mature form across most vertebrates.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-218-P2_5p

mirBase accession

MIMAT0000888

Sequence

0- UUGUGCUUGAUCUAACCAUGU -21

Get sequence

Proposed targets

microrna.org: MIMAT0000888
TargetScanVert: rno-miR-218a-5p
miRDB: MIMAT0000888

Star sequence

Rno-Mir-218-P2_3p*

mirBase accession

MIMAT0017162

Sequence

43- AUGGUUCCGUCAAGCACCAUG -64

Get sequence

Proposed targets

TargetScanVert: rno-miR-218a-1-3p
miRDB: MIMAT0017162