MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-218-o2

Family name MIR-218 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-218a-2
Paralogues Pma-Mir-218-o1  Pma-Mir-218-o3 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cja-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Dre-Mir-218-P2  Eca-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Gmo-Mir-218-P2  Hsa-Mir-218-P2  Laf-Mir-218-P2  Lch-Mir-218-P2  Loc-Mir-218-P2  Mal-Mir-218-P2  Mdo-Mir-218-P2  Mml-Mir-218-P2  Mmr-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Neu-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pab-Mir-218-P2  Pbv-Mir-218-P2  Rno-Mir-218-P2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xtr-Mir-218-P2 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046077.1: 12174144-12174213 [-] UCSC Ensembl
Seed UGUGCUU
Precursor
(pre-Mir +30nt flank)		 
GCCCUGCUGCUCCUGCCGCGUCGCUUUCCCUUGUGCUUGAUCUAACCAUGUGCUUGCCGCGCUCAAGACAAAACAAAACAUGGUUCCUUCAAGCACCAGGGAAGGCCACGCCUCUCGGCCACCCGGGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60    
GCCCUGCUGCUCCUGCC--|   C         U        UCU        GCUUGCCGCGCU 
                   GCGU GCUUUCCCU GUGCUUGA   AACCAUGU            C
                   CGCA CGGAAGGGA CACGAACU   UUGGUACA            A
AGGGGGCCCACCGGCUCUC^   C         C        UCC        AAACAAAACAGA 
.       120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-218-o2_5p
mirBase accessionMIMAT0019529
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
Star sequence

Pma-Mir-218-o2_3p* (predicted)
mirBase accessionNone
Sequence 
48- CAUGGUUCCUUCAAGCACCAGG -70
Get sequence