| MirGeneDB ID | Lch-Mir-218-P2 |
|---|---|
| Family name | MIR-218 (all species) |
| Seed | UGUGCUU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-218-P3 Lch-Mir-218-P4 |
| Orthologues | Aca-Mir-218-P2 Ami-Mir-218-P2 Bta-Mir-218-P2 Cfa-Mir-218-P2 Cli-Mir-218-P2 Cmi-Mir-218-P2 Cpi-Mir-218-P2 Cpo-Mir-218-P2 Dno-Mir-218-P2 Dre-Mir-218-P2 Ete-Mir-218-P2 Gga-Mir-218-P2 Gja-Mir-218-P2 Gmo-Mir-218-P2 Hsa-Mir-218-P2 Loc-Mir-218-P2 Mal-Mir-218-P2 Mdo-Mir-218-P2 Mml-Mir-218-P2 Mmu-Mir-218-P2 Mun-Mir-218-P2 Oan-Mir-218-P2 Ocu-Mir-218-P2 Pbv-Mir-218-P2 Pma-Mir-218-o2 Rno-Mir-218-P2 Sha-Mir-218-P2 Spt-Mir-218-P2 Sto-Mir-218-P2 Tgu-Mir-218-P2 Tni-Mir-218-P2 Xla-Mir-218-P2a Xla-Mir-218-P2b Xtr-Mir-218-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127602.1: 624123-624186 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | ACAGUUUUGAUAACUUAGCGGGAUUUUCCUUUGUGCUUGAUCUAACCAUGUGGUUGCGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGGCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACAGUUUUGAUAACUUA--| G U UUU CU GGUUGCGAG GCG GAU UUCC GUGCUUGAU AACCAUGU G CGC CUG AAGG CACGAACUG UUGGUACA U ACGGUACGACAUCUUUCGA^ A C UAC UC AAAUGAGUA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-218-P2_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
|
| Star sequence | Lch-Mir-218-P2_3p* (predicted) |
| mirBase accession | None |
| Sequence |
42- CAUGGUUCUGUCAAGCACCAUG -64
Get sequence
|
