| MirGeneDB ID | Lch-Mir-218-P3 |
|---|---|
| Family name | MIR-218 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-218-P2 Lch-Mir-218-P4 |
| Orthologues | Dre-Mir-218-P3 Gmo-Mir-218-P3 Loc-Mir-218-P3 Mal-Mir-218-P3 Pma-Mir-218-o3 Tni-Mir-218-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH135808.1: 5387-5451 [-] Ensembl |
| Seed | UGUGCUU |
| Precursor (pre-Mir +30nt flank) |
AGUACAGUGUGUUCUUGGUGGGGUUUUCCCUUGUGCUUGGUCUAACCAUGUGAUGGAGAAGACUUUGGGAAAACAUGGUUCCUCCAAUCACAGGGGAAAGUCUUGCGAACUUCUGCUGCAUUAGCGet precursor sequence |
| Structure | 10 20 30 40 50 60 AGUACAGUGUGUUCUUG--|UG GU C UCU GAUGGAGAAG G GG UUUCCCUUGUG UUGG AACCAUGU \ C UC AAAGGGGACAC AACC UUGGUACA A CGAUUACGUCGUCUUCAAG^GU UG U UCC AAAGGGUUUC 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-218-P3_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUGUGCUUGGUCUAACCAUGUGA -23
Get sequence
|
| Star sequence | Lch-Mir-218-P3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
43- CAUGGUUCCUCCAAUCACAGGG -65
Get sequence
|
