| MirGeneDB ID | Gmo-Mir-218-P3 |
|---|
| Family name |
MIR-218 (all species) |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-218b
|
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| Paralogues |
Gmo-Mir-218-P2
Gmo-Mir-218-P4
|
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| Orthologues |
Dre-Mir-218-P3
Lch-Mir-218-P3
Loc-Mir-218-P3
Mal-Mir-218-P3
Pma-Mir-218-o3
Tni-Mir-218-P3
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Vertebrata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
GeneScaffold_3571: 41286-41343 [-]
UCSC
Ensembl
|
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| Seed |
UGUGCUU |
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Precursor
(pre-Mir +30nt flank) |
AACGGGUGGAUGUCUUUGCCCAGGACCCCAUUGUGCUUGAUCUAACCAUGCAGUGCGUCUUCUGUCCAUGGUUGUACCAAGCACCUUGGAGGCUUGCGAGCACUUGUCUUCUCUUUCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACGGGUGGAUGUCUUUGCC--| A - UU AUC CAGUGCG
CAGG CC CCA GUGCUUG UAACCAUG U
GUUC GG GGU CACGAAC GUUGGUAC C
GCUUUCUCUUCUGUUCACGAGC^ - A UC CAU CUGUCUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | Mirbase gives the reverse complement of this gene. |
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-218-P3_5p |
| mirBase accession | MIMAT0044228 |
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| Sequence |
0- UUGUGCUUGAUCUAACCAUGCA -22
Get sequence
|
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| Star sequence |
Gmo-Mir-218-P3_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
36- CAUGGUUGUACCAAGCACCUUG -58
Get sequence
|
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