MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-218-P2

Family name MIR-218 (all species)
Seed UGUGCUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-218a-2
Paralogues Gmo-Mir-218-P3  Gmo-Mir-218-P4 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Dre-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Hsa-Mir-218-P2  Lch-Mir-218-P2  Loc-Mir-218-P2  Mal-Mir-218-P2  Mdo-Mir-218-P2  Mml-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pbv-Mir-218-P2  Pma-Mir-218-o2  Rno-Mir-218-P2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b  Xtr-Mir-218-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig203168: 55-120 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAGUGAUGGUGUAGAGCAGGUUGUUCCUUUGUGCUUGAUCUAACCAUGUGGCUGCCGGGUCAAAUAGUGGGACAUGGUUCCGUCAAGCACCAGGGAACGGCCGCGCACGAGCCCGCGCACGAGC
Get precursor sequence
Structure
        10         20         30        40        50        60  
AGGAGUGAUGGUGUAGA-  A-|          U         CU        GGCUGCCGGG 
                  GC  GGUUGUUCCUU GUGCUUGAU  AACCAUGU          U
                  CG  CCGGCAAGGGA CACGAACUG  UUGGUACA          C
CGAGCACGCGCCCGAGCA  CG^          C         CC        GGGUGAUAAA 
    120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentNot in assembly (Genbank) but in trace archives.
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-218-P2_5p

mirBase accessionMIMAT0044017
Sequence
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
Star sequence

Gmo-Mir-218-P2_3p* (predicted)

mirBase accessionNone
Sequence
44- CAUGGUUCCGUCAAGCACCAGG -66
Get sequence