MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-218-P2

Family name MIR-218 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-218-1
Paralogues Xtr-Mir-218-P4 
Orthologues Aca-Mir-218-P2  Ami-Mir-218-P2  Bta-Mir-218-P2  Cfa-Mir-218-P2  Cja-Mir-218-P2  Cli-Mir-218-P2  Cmi-Mir-218-P2  Cpi-Mir-218-P2  Cpo-Mir-218-P2  Dno-Mir-218-P2  Dre-Mir-218-P2  Eca-Mir-218-P2  Ete-Mir-218-P2  Gga-Mir-218-P2  Gja-Mir-218-P2  Gmo-Mir-218-P2  Hsa-Mir-218-P2  Laf-Mir-218-P2  Lch-Mir-218-P2  Loc-Mir-218-P2  Mal-Mir-218-P2  Mdo-Mir-218-P2  Mml-Mir-218-P2  Mmr-Mir-218-P2  Mmu-Mir-218-P2  Mun-Mir-218-P2  Neu-Mir-218-P2  Oan-Mir-218-P2  Ocu-Mir-218-P2  Pab-Mir-218-P2  Pbv-Mir-218-P2  Pma-Mir-218-o2  Rno-Mir-218-P2  Sha-Mir-218-P2  Spt-Mir-218-P2  Sto-Mir-218-P2  Tgu-Mir-218-P2  Tni-Mir-218-P2  Xla-Mir-218-P2a  Xla-Mir-218-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)		 chr1: 22730618-22730681 [-] UCSC Ensembl
Seed UGUGCUU
Precursor
(pre-Mir +30nt flank)		 
GCACUUUUGGUAACAAGGCGAGAUUUUCUGUUGUGCUUGAUCUAACCAUGUGGUUGUGAGGUAUGAGUAAAACAUGGUUCUGUCAAGCACCAUGGAACGUCACGCAGCUUUCUACAGCAUGGCA
Get precursor sequence
Structure
        10          20        30        40        50        60 
GCACUUUUGGUAACAAG--|  A   U      U         CU        GGUUGUGAG 
                   GCG GAU UUCUGU GUGCUUGAU  AACCAUGU         G
                   CGC CUG AAGGUA CACGAACUG  UUGGUACA         U
ACGGUACGACAUCUUUCGA^  A   C      C         UC        AAAUGAGUA 
  120       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a Dicer cut +3 on the 3p arm but without a corresponding 5p read.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Mature sequence

Xtr-Mir-218-P2_5p
mirBase accessionMIMAT0003631
Sequence 
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
Proposed targets TargetScanVert: xtr-miR-218
Star sequence

Xtr-Mir-218-P2_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAUGGUUCUGUCAAGCACCAUG -64
Get sequence