| MirGeneDB ID | Pma-Mir-218-o1 |
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| Family name |
MIR-218 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-218a-1
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| Paralogues |
Pma-Mir-218-o2
Pma-Mir-218-o3
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| Orthologues |
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046098.1: 3240022-3240078 [+]
UCSC
Ensembl
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| Seed |
UGUGCUU |
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Precursor
(pre-Mir +30nt flank) |
GAAGAUCCCAGAAAGACGGCCGUCCCUGCCUUGUGCUUGAUCUAACCAUGUGCUGCCCCAAACAACAUGGUUUGUUCAUGCACCAGGUAGAGGCAUGCCCUUUCUUCCUCCAGGCGG
Get precursor sequence
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| Structure | 10 20 30 40 50
GAAGAUCCCAGAAAGAC- C-| C U U UCU GCUGCC
GGC GUC CUGCCU GUGC UGA AACCAUGU \
CCG CGG GAUGGA CACG ACU UUGGUACA C
GGCGGACCUCCUUCUUUC UA^ A C U UGU ACAAAC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-218-o1_5p |
| mirBase accession | MIMAT0019529 |
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| Sequence |
0- UUGUGCUUGAUCUAACCAUGUG -22
Get sequence
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| Star sequence |
Pma-Mir-218-o1_3p* (predicted) |
| mirBase accession | MIMAT0019530 |
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| Sequence |
35- CAUGGUUUGUUCAUGCACCAGG -57
Get sequence
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