MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-135-P1

Family name MIR-135 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-135-1
Paralogues Cli-Mir-135-P2  Cli-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cja-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Eca-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(colLiv2)		 scaffold335: 781848-781908 [-]
Clustered miRNAs
(< 50kb from Mir-135-P1)		 Let-7-P2c3 scaffold335: 757947-758024 [-]
Mir-135-P1 scaffold335: 781848-781908 [-]
Seed AUGGCUU
Precursor
(pre-Mir +30nt flank)		 
GCAUGGAGCAGCUCAUGGCCUGCUGUCUUGUAUGGCUUUUUAUUCCUAUGUGAUUAUACAUCCCACUUCAUAUAGGGAUUGAAGCCGUGCAAUACACUGGGGUACUACGGCGGAGAACAGC
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Structure
        10          20        30        40        50        60
GCAUGGAGCAGCUCAUGG--|  GC   C            UU            UUAUAC 
                    CCU  UGU UUGUAUGGCUUU  AUUCCUAUGUGA      A
                    GGG  ACA AACGUGCCGAAG  UAGGGAUAUACU      U
CGACAAGAGGCGGCAUCAUG^  UC   U            U-            UCACCC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-135-P1_5p
mirBase accessionMIMAT0038514
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Cli-Mir-135-P1_3p*
mirBase accessionMIMAT0038515
Sequence 
39- AUAUAGGGAUUGAAGCCGUGCA -61
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