| MirGeneDB ID | Dre-Mir-135-P1 |
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| Family name |
MIR-135 (all species) |
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| Species |
Zebrafish (Danio rerio) |
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| MiRBase ID |
dre-mir-135b
|
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| Paralogues |
Dre-Mir-135-P2a
Dre-Mir-135-P4a
Dre-Mir-135-P4b
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| Orthologues |
Aca-Mir-135-P1
Ami-Mir-135-P1
Bta-Mir-135-P1
Cfa-Mir-135-P1
Cja-Mir-135-P1
Cli-Mir-135-P1
Cmi-Mir-135-P1
Cpi-Mir-135-P1
Cpo-Mir-135-P1
Dno-Mir-135-P1
Eca-Mir-135-P1
Ete-Mir-135-P1
Gga-Mir-135-P1
Gja-Mir-135-P1
Gmo-Mir-135-P1
Hsa-Mir-135-P1
Laf-Mir-135-P1
Lch-Mir-135-P1
Loc-Mir-135-P1
Mal-Mir-135-P1
Mml-Mir-135-P1
Mmr-Mir-135-P1
Mmu-Mir-135-P1
Mun-Mir-135-P1
Oan-Mir-135-P1
Ocu-Mir-135-P1
Pab-Mir-135-P1
Pbv-Mir-135-P1
Pma-Mir-135-o1
Rno-Mir-135-P1
Spt-Mir-135-P1
Sto-Mir-135-P1
Tgu-Mir-135-P1
Tni-Mir-135-P1
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| Node of Origin (locus) |
Gnathostomata
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| Node of Origin (family) |
Chordata
|
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Genome context
(danRer11) |
chr8: 26005600-26005660 [+]
UCSC
Ensembl
|
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| Seed |
AUGGCUU |
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Precursor
(pre-Mir +30nt flank) |
AAGACAUCUCUUUCAUUGCUCUUUGCCCCGUAUGGCUUUUUAUUCCUAUCUGAGAAUUGCUCAGGACUCAUAUAGGGAUGGAAGCCAUGCAGGGCUGGGGGACUGUGUCAUCAUGGAGACU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAGACAUCUCUUUCAUUG--| UU C U C GAAUUG
CUCU GCCC GUAUGGCUUUU AUUCCUAU UGA C
GGGG CGGG CGUACCGAAGG UAGGGAUA ACU U
UCAGAGGUACUACUGUGUCA^ GU A - U CAGGAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Br |
Em |
Ey |
Gu |
Gu |
He |
Li |
Li |
Ov |
Te |
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| Mature sequence |
Dre-Mir-135-P1_5p |
| mirBase accession | MIMAT0003032 |
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| Sequence |
0- UAUGGCUUUUUAUUCCUAUCUGA -23
Get sequence
|
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| Proposed targets |
TargetScanFish: dre-miR-135b
|
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| Star sequence |
Dre-Mir-135-P1_3p* |
| mirBase accession | MIMAT0032006 |
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| Sequence |
39- AUAUAGGGAUGGAAGCCAUGCA -61
Get sequence
|
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