MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-135b
Paralogues Dre-Mir-135-P2a  Dre-Mir-135-P4a  Dre-Mir-135-P4b 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(danRer11)		 chr8: 26005600-26005660 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGACAUCUCUUUCAUUGCUCUUUGCCCCGUAUGGCUUUUUAUUCCUAUCUGAGAAUUGCUCAGGACUCAUAUAGGGAUGGAAGCCAUGCAGGGCUGGGGGACUGUGUCAUCAUGGAGACU
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Structure
        10          20        30        40        50        60
AAGACAUCUCUUUCAUUG--|   UU    C           U        C   GAAUUG 
                    CUCU  GCCC GUAUGGCUUUU AUUCCUAU UGA      C
                    GGGG  CGGG CGUACCGAAGG UAGGGAUA ACU      U
UCAGAGGUACUACUGUGUCA^   GU    A           -        U   CAGGAC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-135-P1_5p
mirBase accessionMIMAT0003032
Sequence 
0- UAUGGCUUUUUAUUCCUAUCUGA -23
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Proposed targets TargetScanFish: dre-miR-135b
Star sequence

Dre-Mir-135-P1_3p*
mirBase accessionMIMAT0032006
Sequence 
39- AUAUAGGGAUGGAAGCCAUGCA -61
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