MirGeneDB 3.0
130 microRNA genes with seed AUGGCUU
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Pma-Mir-135-o1 pma-mir-135a MIR-135 AUGGCUU MIMAT0019463 MIMAT0019464 NC_046082.1 3812001 3812061 + P. marinus Chordata No
Pma-Mir-135-o2 pma-mir-135b MIR-135 AUGGCUU MIMAT0019465 None NC_046098.1 7520135 7520200 - P. marinus Chordata Unknown 1
Aca-Mir-135-P1 aca-mir-135-1 MIR-135 AUGGCUU MIMAT0021750 MIMAT0021751 2 153285359 153285419 + Gnathostomata Chordata No 1
Ami-Mir-135-P1 ami-mir-135-1 MIR-135 AUGGCUU MIMAT0038149 MIMAT0038150 NW_017713629.1 3671053 3671113 + Gnathostomata Chordata No 1
Bta-Mir-135-P1 bta-mir-135a-1 MIR-135 AUGGCUU MIMAT0009228 None NC_037349.1 48588917 48588976 + Gnathostomata Chordata No 1
Cfa-Mir-135-P1 cfa-mir-135a-1 MIR-135 AUGGCUU MIMAT0010196 None chr20 37461833 37461892 + Gnathostomata Chordata No 1
Cja-Mir-135-P1 None MIR-135 AUGGCUU None None CM021929.1 28590992 28591051 - Gnathostomata Chordata Unknown 1
Cli-Mir-135-P1 cli-mir-135-1 MIR-135 AUGGCUU MIMAT0038514 MIMAT0038515 scaffold335 781848 781908 - Gnathostomata Chordata No 1
Cmi-Mir-135-P1 None MIR-135 AUGGCUU None None KI635869.1 7284973 7285032 - Gnathostomata Chordata No 1
Cpi-Mir-135-P1 cpi-mir-135-1 MIR-135 AUGGCUU MIMAT0037754 MIMAT0037755 JH584490 748614 748674 - Gnathostomata Chordata No 1
Cpo-Mir-135-P1 cpo-mir-135a-1 MIR-135 AUGGCUU MIMAT0046992 MIMAT0046993 scaffold_8 27281775 27281834 - Gnathostomata Chordata Unknown 1
Dno-Mir-135-P1 dno-mir-135a-1 MIR-135 AUGGCUU MIMAT0047639 MIMAT0047640 JH567460 186933 186992 - Gnathostomata Chordata No 1
Dre-Mir-135-P1 dre-mir-135b MIR-135 AUGGCUU MIMAT0003032 MIMAT0032006 chr8 26005600 26005660 + Gnathostomata Chordata No 1 1
Eca-Mir-135-P1 eca-mir-135a MIR-135 AUGGCUU MIMAT0013078 None CM009163.1 36933009 36933068 + Gnathostomata Chordata Unknown 1
Ete-Mir-135-P1 None MIR-135 AUGGCUU None None JH980390 4724832 4724890 - Gnathostomata Chordata Unknown 1
Gga-Mir-135-P1 gga-mir-135a-1 MIR-135 AUGGCUU MIMAT0001099 MIMAT0031036 12 3411670 3411730 - Gnathostomata Chordata No 1
Gja-Mir-135-P1 None MIR-135 AUGGCUU None None NW_015166421.1 1929383 1929443 + Gnathostomata Chordata No 1
Gmo-Mir-135-P1 gmo-mir-135b MIR-135 AUGGCUU MIMAT0044053 MIMAT0044054 contig475703 148 205 + Gnathostomata Chordata No 1
Hsa-Mir-135-P1 hsa-mir-135a-1 MIR-135 AUGGCUU MIMAT0000428 MIMAT0004595 chr3 52294233 52294292 - Gnathostomata Chordata No 1
Laf-Mir-135-P1 None MIR-135 AUGGCUU None None GL010039.1 15324288 15324347 + Gnathostomata Chordata Unknown 1
Lch-Mir-135-P1 None MIR-135 AUGGCUU None None JH126569.1 3154915 3154976 + Gnathostomata Chordata Unknown 1
Loc-Mir-135-P1 None MIR-135 AUGGCUU None None LG5 50409839 50409898 - Gnathostomata Chordata No
Mal-Mir-135-P1 None MIR-135 AUGGCUU None None KV884993.1 327112 327171 - Gnathostomata Chordata No 1
Mml-Mir-135-P1 mml-mir-135a-1 MIR-135 AUGGCUU MIMAT0002251 MIMAT0031029 CM014337.1 108442749 108442808 - Gnathostomata Chordata No 1
Mmr-Mir-135-P1 None MIR-135 AUGGCUU None None CM007674.1 7319197 7319256 - Gnathostomata Chordata Unknown 1
Mmu-Mir-135-P1 mmu-mir-135a-1 MIR-135 AUGGCUU MIMAT0000147 MIMAT0004531 chr9 106154140 106154199 + Gnathostomata Chordata No 1
Mun-Mir-135-P1 None MIR-135 AUGGCUU None None LR594637.1 179481094 179481154 - Gnathostomata Chordata Unknown
Oan-Mir-135-P1 oan-mir-135b-2 MIR-135 AUGGCUU MIMAT0006870 MIMAT0031114 NC_041750.1 16824873 16824932 + Gnathostomata Chordata Yes 1
Ocu-Mir-135-P1 ocu-mir-135a-1 MIR-135 AUGGCUU MIMAT0048227 MIMAT0048228 chr9 19378424 19378483 - Gnathostomata Chordata No 1
Pab-Mir-135-P1 None MIR-135 AUGGCUU None None CM068843.1 102076537 102076596 + Gnathostomata Chordata Unknown 1
Pbv-Mir-135-P1 pbv-mir-135-1 MIR-135 AUGGCUU MIMAT0038941 MIMAT0038942 KE958355.1 30933 30993 - Gnathostomata Chordata No 1
Rno-Mir-135-P1 None MIR-135 AUGGCUU None None chr8 114847396 114847455 + Gnathostomata Chordata Unknown 1
Spt-Mir-135-P1 None MIR-135 AUGGCUU None None QEPC01007158.1 692713 692773 - Gnathostomata Chordata Unknown 1
Sto-Mir-135-P1 None MIR-135 AUGGCUU None None BFAA01001833.1 127580 127639 - Gnathostomata Chordata No 1
Tgu-Mir-135-P1 tgu-mir-135b MIR-135 AUGGCUU MIMAT0014560 None 12 14220723 14220783 + Gnathostomata Chordata No 1
Tni-Mir-135-P1 tni-mir-135b MIR-135 AUGGCUU MIMAT0003031 None 9 635490 635549 + Gnathostomata Chordata No 1
Aca-Mir-135-P2 aca-mir-135-2 MIR-135 AUGGCUU MIMAT0021750 MIMAT0021752 5 29776333 29776392 - Gnathostomata Chordata No 1
Ami-Mir-135-P2 ami-mir-135-2 MIR-135 AUGGCUU MIMAT0038149 MIMAT0038151 NW_017714414.1 12728185 12728244 - Gnathostomata Chordata No 1
Bta-Mir-135-P2 bta-mir-135a-2 MIR-135 AUGGCUU MIMAT0009228 None NC_037332.1 61775977 61776036 + Gnathostomata Chordata No 1
Cfa-Mir-135-P2 cfa-mir-135a-2 MIR-135 AUGGCUU MIMAT0010196 MIMAT0006628 chr15 37181420 37181479 + Gnathostomata Chordata No 1
Cja-Mir-135-P2 None MIR-135 AUGGCUU None None CM021923.1 97169960 97170019 + Gnathostomata Chordata Unknown 1
Cli-Mir-135-P2 cli-mir-135-2 MIR-135 AUGGCUU MIMAT0038514 MIMAT0038516 scaffold557 971015 971074 - Gnathostomata Chordata No 1
Cmi-Mir-135-P2 None MIR-135 AUGGCUU None None KI636091.1 65455 65514 - Gnathostomata Chordata No 1
Cpi-Mir-135-P2 cpi-mir-135-2 MIR-135 AUGGCUU MIMAT0037754 MIMAT0037756 JH584806 2870629 2870688 + Gnathostomata Chordata No 1
Cpo-Mir-135-P2 cpo-mir-135a-2 MIR-135 AUGGCUU MIMAT0046992 MIMAT0046994 scaffold_9 4516695 4516754 - Gnathostomata Chordata Unknown 1
Dno-Mir-135-P2 dno-mir-135a-2 MIR-135 AUGGCUU MIMAT0047639 MIMAT0047641 JH569142 1448131 1448190 + Gnathostomata Chordata Yes 1
Eca-Mir-135-P2 eca-mir-135a-2 MIR-135 AUGGCUU MIMAT0013078 None CM009175.1 23312821 23312880 + Gnathostomata Chordata No 1
Ete-Mir-135-P2 None MIR-135 AUGGCUU None None JH980300 30324343 30324402 - Gnathostomata Chordata No 1
Gga-Mir-135-P2 gga-mir-135a-2 MIR-135 AUGGCUU MIMAT0001099 MIMAT0026489 1 46333921 46333980 + Gnathostomata Chordata No 1
Gja-Mir-135-P2 None MIR-135 AUGGCUU None None NW_015161984.1 364369 364428 + Gnathostomata Chordata No 1
Hsa-Mir-135-P2 hsa-mir-135a-2 MIR-135 AUGGCUU MIMAT0000428 MIMAT0037309 chr12 97563834 97563893 + Gnathostomata Chordata No 1
Laf-Mir-135-P2 None MIR-135 AUGGCUU None None GL010029.1 92462984 92463043 + Gnathostomata Chordata Unknown 1
Lch-Mir-135-P2 None MIR-135 AUGGCUU None None JH126824.1 658696 658755 - Gnathostomata Chordata Unknown 1
Loc-Mir-135-P2 None MIR-135 AUGGCUU None None LG8 7556958 7557017 + Gnathostomata Chordata No 1
Mdo-Mir-135-P2 mdo-mir-135a MIR-135 AUGGCUU MIMAT0004108 MIMAT0026666 8 74872662 74872721 + Gnathostomata Chordata No 1
Mml-Mir-135-P2 mml-mir-135a-2 MIR-135 AUGGCUU MIMAT0002251 MIMAT0026567 CM014346.1 97371668 97371727 + Gnathostomata Chordata No 1
Mmr-Mir-135-P2 None MIR-135 AUGGCUU None None CM007667.1 24956956 24957015 - Gnathostomata Chordata Unknown 1
Mmu-Mir-135-P2 mmu-mir-135a-2 MIR-135 AUGGCUU MIMAT0000147 MIMAT0017064 chr10 92072104 92072163 - Gnathostomata Chordata No 1
Mun-Mir-135-P2 None MIR-135 AUGGCUU None None LR594640.1 25704522 25704581 + Gnathostomata Chordata Unknown
Neu-Mir-135-P2 None MIR-135 AUGGCUU None None CM051815.1 280375840 280375898 + Gnathostomata Chordata No 1
Oan-Mir-135-P2 oan-mir-135a MIR-135 AUGGCUU None MIMAT0007193 NC_041741.1 36251177 36251236 + Gnathostomata Chordata Yes 1
Ocu-Mir-135-P2 ocu-mir-135a-2 MIR-135 AUGGCUU MIMAT0048227 MIMAT0048229 chr4 76791386 76791445 + Gnathostomata Chordata No 1
Pab-Mir-135-P2 None MIR-135 AUGGCUU None None CM054689.2 96095738 96095797 + Gnathostomata Chordata No 1
Pbv-Mir-135-P2 pbv-mir-135-2 MIR-135 AUGGCUU MIMAT0038941 MIMAT0038943 KE952989.1 876724 876783 - Gnathostomata Chordata No 1
Rno-Mir-135-P2 rno-mir-135a MIR-135 AUGGCUU MIMAT0000841 MIMAT0004732 chr7 32894895 32894954 - Gnathostomata Chordata No 1
Sha-Mir-135-P2 sha-mir-135a MIR-135 AUGGCUU MIMAT0022823 None GL861598.1 2879589 2879648 + Gnathostomata Chordata No 1
Spt-Mir-135-P2 None MIR-135 AUGGCUU None None QEPC01005745.1 488134 488193 - Gnathostomata Chordata Unknown 1
Sto-Mir-135-P2 None MIR-135 AUGGCUU None None BFAA01010850.1 79525 79583 + Gnathostomata Chordata No 1
Tgu-Mir-135-P2 tgu-mir-135a-1 MIR-135 AUGGCUU MIMAT0014559 MIMAT0014643 1A 43566367 43566426 + Gnathostomata Chordata No 1
Xtr-Mir-135-P2 xtr-mir-135-1 MIR-135 AUGGCUU MIMAT0003598 None chr3 41571717 41571776 + Gnathostomata Chordata No 1
Dre-Mir-135-P2a dre-mir-135a MIR-135 AUGGCUU MIMAT0003348 None chr25 31044133 31044192 - Clupeocephala Chordata No 1
Gmo-Mir-135-P2a gmo-mir-135a MIR-135 AUGGCUU MIMAT0044328 None scaffold02980 68878 68937 - Clupeocephala Chordata Unknown 1 1
Mal-Mir-135-P2a None MIR-135 AUGGCUU None None KV884895.1 242417 242476 - Clupeocephala Chordata No 1
Tni-Mir-135-P2a None MIR-135 AUGGCUU None None 13 5265577 5265638 + Clupeocephala Chordata Unknown 1
Gmo-Mir-135-P2b gmo-mir-135d MIR-135 AUGGCUU MIMAT0044259 MIMAT0044260 GeneScaffold_4080 29905 29964 - Clupeocephala Chordata No 1
Mal-Mir-135-P2b None MIR-135 AUGGCUU None None KV884729.1 4420321 4420379 - Clupeocephala Chordata No 1
Tni-Mir-135-P2b None MIR-135 AUGGCUU None None 19 3913178 3913236 - Clupeocephala Chordata No 1
Xla-Mir-135-P2c xla-mir-135 MIR-135 AUGGCUU MIMAT0046447 MIMAT0046448 NC_030728.1 43916937 43916996 + X. laevis Chordata No 1
Xla-Mir-135-P2d None MIR-135 AUGGCUU None None NC_030729.1 94389028 94389087 - X. laevis Chordata No 1
Aca-Mir-135-P4 aca-mir-135-3 MIR-135 AUGGCUU MIMAT0021750 MIMAT0021753 GL343228.1 62430 62490 - Gnathostomata Chordata No 1
Ami-Mir-135-P4 ami-mir-135-3 MIR-135 AUGGCUU MIMAT0038149 MIMAT0038152 NW_017713700.1 1169636 1169696 + Gnathostomata Chordata No 1
Bta-Mir-135-P4 bta-mir-135b MIR-135 AUGGCUU MIMAT0009229 None NC_037343.1 3197455 3197515 - Gnathostomata Chordata Yes 1
Cfa-Mir-135-P4 cfa-mir-135b MIR-135 AUGGCUU MIMAT0009839 None chr38 1926572 1926632 - Gnathostomata Chordata No 1
Cja-Mir-135-P4 None MIR-135 AUGGCUU None None CM021933.1 29167548 29167608 - Gnathostomata Chordata Unknown 1
Cli-Mir-135-P4 cli-mir-135-3 MIR-135 AUGGCUU MIMAT0038514 MIMAT0038517 scaffold176 178807 178867 + Gnathostomata Chordata No 1
Cmi-Mir-135-P4 None MIR-135 AUGGCUU None None KI635924.1 1082501 1082562 + Gnathostomata Chordata No
Cpi-Mir-135-P4 cpi-mir-135-3 MIR-135 AUGGCUU MIMAT0037754 MIMAT0037757 JH584805 1262856 1262916 - Gnathostomata Chordata No 1
Cpo-Mir-135-P4 cpo-mir-135b MIR-135 AUGGCUU MIMAT0046995 MIMAT0046996 scaffold_12 17315920 17315980 + Gnathostomata Chordata No 1
Dno-Mir-135-P4 dno-mir-135b MIR-135 AUGGCUU MIMAT0047642 MIMAT0047643 JH563639 28397 28457 + Gnathostomata Chordata No 1
Eca-Mir-135-P4 eca-mir-135b MIR-135 AUGGCUU MIMAT0012952 None CM009152.1 1907520 1907580 - Gnathostomata Chordata Unknown 1
Ete-Mir-135-P4 None MIR-135 AUGGCUU None None JH980299 31757625 31757685 - Gnathostomata Chordata Unknown 1
Gga-Mir-135-P4 gga-mir-135a-3 MIR-135 AUGGCUU MIMAT0001099 MIMAT0031038 26 2124466 2124526 - Gnathostomata Chordata No 1
Gja-Mir-135-P4 None MIR-135 AUGGCUU None None NW_015171510.1 461162 461222 + Gnathostomata Chordata No 1
Hsa-Mir-135-P4 hsa-mir-135b MIR-135 AUGGCUU MIMAT0000758 MIMAT0004698 chr1 205448323 205448383 - Gnathostomata Chordata No 1
Laf-Mir-135-P4 None MIR-135 AUGGCUU None None GL010040.1 10428233 10428293 - Gnathostomata Chordata Unknown 1
Lch-Mir-135-P4 None MIR-135 AUGGCUU None None JH126599.1 251546 251606 + Gnathostomata Chordata Unknown 1
Loc-Mir-135-P4 None MIR-135 AUGGCUU None None LG3 34097469 34097529 + Gnathostomata Chordata No 1
Mdo-Mir-135-P4 mdo-mir-135b MIR-135 AUGGCUU MIMAT0004109 MIMAT0026667 2 111348493 111348553 - Gnathostomata Chordata No 1
Mml-Mir-135-P4 mml-mir-135b MIR-135 AUGGCUU MIMAT0006191 MIMAT0026820 CM014336.1 62967444 62967504 - Gnathostomata Chordata No 1
Mmr-Mir-135-P4 None MIR-135 AUGGCUU None None CM007687.1 29251737 29251797 - Gnathostomata Chordata Unknown 1
Mmu-Mir-135-P4 mmu-mir-135b MIR-135 AUGGCUU MIMAT0000612 MIMAT0017044 chr1 132198103 132198163 + Gnathostomata Chordata No 1
Mun-Mir-135-P4 None MIR-135 AUGGCUU None None LR594643.1 4420909 4420968 - Gnathostomata Chordata Unknown 1
Neu-Mir-135-P4 None MIR-135 AUGGCUU None None CM051814.1 434117948 434118008 + Gnathostomata Chordata Unknown 1
Oan-Mir-135-P4 oan-mir-135b-1 MIR-135 AUGGCUU MIMAT0006870 MIMAT0006871 NC_041734.1 61618119 61618179 - Gnathostomata Chordata Yes
Ocu-Mir-135-P4 ocu-mir-135b MIR-135 AUGGCUU MIMAT0048230 MIMAT0048231 chr16 66692191 66692251 + Gnathostomata Chordata No 1
Pab-Mir-135-P4 None MIR-135 AUGGCUU None None CM054679.2 44080534 44080594 + Gnathostomata Chordata Unknown 1
Pbv-Mir-135-P4 pbv-mir-135-3 MIR-135 AUGGCUU MIMAT0038941 MIMAT0038944 KE954012.1 257845 257905 - Gnathostomata Chordata No 1
Rno-Mir-135-P4 rno-mir-135b MIR-135 AUGGCUU MIMAT0000611 MIMAT0017043 chr13 48977001 48977061 + Gnathostomata Chordata No 1
Sha-Mir-135-P4 None MIR-135 AUGGCUU None None GL856779.1 1605819 1605879 - Gnathostomata Chordata No 1
Spt-Mir-135-P4 None MIR-135 AUGGCUU None None QEPC01004435.1 755813 755873 + Gnathostomata Chordata Unknown 1
Sto-Mir-135-P4 None MIR-135 AUGGCUU None None BFAA01000334.1 138445 138504 - Gnathostomata Chordata No 1
Tgu-Mir-135-P4 tgu-mir-135a-2 MIR-135 AUGGCUU MIMAT0014559 MIMAT0031089 26 3233049 3233109 - Gnathostomata Chordata No 1
Xla-Mir-135-P4 None MIR-135 AUGGCUU None None NW_016694943.1 61510 61569 + Gnathostomata Chordata No 1
Xtr-Mir-135-P4 xtr-mir-135-2 MIR-135 AUGGCUU MIMAT0003598 None chr2 64757303 64757362 - Gnathostomata Chordata No 1
Dre-Mir-135-P4a dre-mir-135c-1 MIR-135 AUGGCUU MIMAT0001833 None chr11 38175079 38175140 - Clupeocephala Chordata No 1
Gmo-Mir-135-P4a gmo-mir-135c-1 MIR-135 AUGGCUU MIMAT0044130 MIMAT0044178 GeneScaffold_2161 18287 18347 - Clupeocephala Chordata No 1
Mal-Mir-135-P4a None MIR-135 AUGGCUU None None KV884929.1 82863 82923 + Clupeocephala Chordata No 1
Tni-Mir-135-P4a tni-mir-135a MIR-135 AUGGCUU MIMAT0003052 None 11 11400949 11401009 - Clupeocephala Chordata Unknown 1
Dre-Mir-135-P4b dre-mir-135c-2 MIR-135 AUGGCUU MIMAT0001833 None chr23 18063203 18063264 - Clupeocephala Chordata No 1
Gmo-Mir-135-P4b gmo-mir-135c-2 MIR-135 AUGGCUU MIMAT0044130 None GeneScaffold_1609 1266799 1266861 + Clupeocephala Chordata No 1
Mal-Mir-135-P4b None MIR-135 AUGGCUU None None KV884806.1 367986 368047 - Clupeocephala Chordata No 1
Tni-Mir-135-P4b None MIR-135 AUGGCUU None None 9 8239055 8239116 - Clupeocephala Chordata Unknown 1
Bfl-Mir-135-P5 bfl-mir-135b-1 MIR-135 AUGGCUU MIMAT0010194 None NC_049983.1 13598256 13598313 - Branchiostoma Chordata Unknown 1
Bla-Mir-135-P5 None MIR-135 AUGGCUU None None Sc0000129 103824 103881 + Branchiostoma Chordata No 1
Bfl-Mir-135-P6 bfl-mir-135a-1 MIR-135 AUGGCUU MIMAT0009992 None NC_049983.1 13598038 13598096 - Branchiostoma Chordata Unknown 1 1
Bla-Mir-135-P6 None MIR-135 AUGGCUU None None Sc0000129 104052 104110 + Branchiostoma Chordata No 1 1
Cin-Mir-135-P7 cin-mir-132-2 MIR-135 AUGGCUU MIMAT0016425 None HT000116.1 70787 70845 + C. intestinalis Chordata No 1 1
Cin-Mir-135-P8 cin-mir-135 MIR-135 AUGGCUU MIMAT0016409 MIMAT0016410 HT000116.1 71231 71286 + C. intestinalis Chordata No 1
Ebu-Mir-135-P9 None MIR-135 AUGGCUU None None FYBX02000030.1 2040214 2040279 + E. burgeri Chordata Unknown 1
Ebu-Mir-135-P10 None MIR-135 AUGGCUU None None FYBX02010664.1 1778976 1779034 + E. burgeri Chordata Unknown 1

(red - mature/co-mature, blue - star)

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