MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-135-P2a

Family name MIR-135 (all species)
Seed AUGGCUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-135a
Paralogues Gmo-Mir-135-P1  Gmo-Mir-135-P2b  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Hsa-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Tni-Mir-135-P2a  Xtr-Mir-135-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
scaffold02980: 68878-68937 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUCCUGCUAUACUCAUGCCGCUCUGUCUGCUAUGGCUUUUUAUUCCUAUGUGAUGUUGAACCAUGCUCACAUGGAAACAGAAGCCAUUUUAGACACCGUGAGAGAACCACACGACAGAGA
Get precursor sequence
Structure
        10          20        30        40        50          
GUCCUGCUAUACUCAUGC--|  UC      CU         UA    U      UGUUGA 
                    CGC  UGUCUG  AUGGCUUUU  UUCC AUGUGA      \
                    GUG  ACAGAU  UACCGAAGA  AAGG UACACU      A
AGAGACAGCACACCAAGAGA^  CC      UU         CA    -      CGUACC 
.       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-135-P2a_5p

mirBase accessionMIMAT0044328
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
Star sequence

Gmo-Mir-135-P2a_3p* (predicted)

mirBase accessionNone
Sequence
38- ACAUGGAAACAGAAGCCAUUUU -60
Get sequence