| MirGeneDB ID | Tgu-Mir-135-P2 |
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| Family name |
MIR-135 (all species) |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-135a-1
|
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| Paralogues |
Tgu-Mir-135-P1
Tgu-Mir-135-P4
|
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| Orthologues |
Aca-Mir-135-P2
Ami-Mir-135-P2
Bta-Mir-135-P2
Cfa-Mir-135-P2
Cja-Mir-135-P2
Cli-Mir-135-P2
Cmi-Mir-135-P2
Cpi-Mir-135-P2
Cpo-Mir-135-P2
Dno-Mir-135-P2
Dre-Mir-135-P2a
Eca-Mir-135-P2
Ete-Mir-135-P2
Gga-Mir-135-P2
Gja-Mir-135-P2
Gmo-Mir-135-P2a
Gmo-Mir-135-P2b
Hsa-Mir-135-P2
Laf-Mir-135-P2
Lch-Mir-135-P2
Loc-Mir-135-P2
Mal-Mir-135-P2a
Mal-Mir-135-P2b
Mdo-Mir-135-P2
Mml-Mir-135-P2
Mmr-Mir-135-P2
Mmu-Mir-135-P2
Mun-Mir-135-P2
Neu-Mir-135-P2
Oan-Mir-135-P2
Ocu-Mir-135-P2
Pab-Mir-135-P2
Pbv-Mir-135-P2
Pma-Mir-135-o2
Rno-Mir-135-P2
Sha-Mir-135-P2
Spt-Mir-135-P2
Sto-Mir-135-P2
Tni-Mir-135-P2a
Tni-Mir-135-P2b
Xla-Mir-135-P2c
Xla-Mir-135-P2d
Xtr-Mir-135-P2
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(TaeGut1_add) |
1A: 43566367-43566426 [+]
UCSC
Ensembl
|
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| Seed |
AUGGCUU |
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Precursor
(pre-Mir +30nt flank) |
UCUGAUCAAGAUAAAUUCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUCAGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCUGAUCAAGAUAAAUU---| UCUA U UAGUAA
CAC GUGUUUUAUGGCUUUU AUUCCUAUGUGA \
GUG CAUAAAGUACCGAAGG UAGGGAUGUACU U
GUAGACUCAACUACUAAAAA^ UUA- - CUGAAA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Tgu-Mir-135-P2_5p |
| mirBase accession | MIMAT0014559 |
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| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
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| Star sequence |
Tgu-Mir-135-P2_3p* |
| mirBase accession | MIMAT0014643 |
|---|
| Sequence |
38- AUGUAGGGAUGGAAGCCAUGAA -60
Get sequence
|
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