Mir-135-P2b

MirGeneDB ID

Mal-Mir-135-P2b

Family name

MIR-135 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-135-P1 Mal-Mir-135-P2a Mal-Mir-135-P4a Mal-Mir-135-P4b

Orthologues

Aca-Mir-135-P2 Ami-Mir-135-P2 Bta-Mir-135-P2 Cfa-Mir-135-P2 Cja-Mir-135-P2 Cli-Mir-135-P2 Cmi-Mir-135-P2 Cpi-Mir-135-P2 Cpo-Mir-135-P2 Dno-Mir-135-P2 Eca-Mir-135-P2 Ete-Mir-135-P2 Gga-Mir-135-P2 Gja-Mir-135-P2 Gmo-Mir-135-P2b Hsa-Mir-135-P2 Laf-Mir-135-P2 Lch-Mir-135-P2 Loc-Mir-135-P2 Mdo-Mir-135-P2 Mml-Mir-135-P2 Mmr-Mir-135-P2 Mmu-Mir-135-P2 Mun-Mir-135-P2 Neu-Mir-135-P2 Oan-Mir-135-P2 Ocu-Mir-135-P2 Pab-Mir-135-P2 Pbv-Mir-135-P2 Pma-Mir-135-o2 Rno-Mir-135-P2 Sha-Mir-135-P2 Spt-Mir-135-P2 Sto-Mir-135-P2 Tgu-Mir-135-P2 Tni-Mir-135-P2b Xtr-Mir-135-P2

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Chordata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884729.1: 4420321-4420379 [-] UCSC Ensembl

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

CUUCCCUCCUGUGAGAUUGCUGUUGUGUCUUAUGGCUUUUUAUUCCUACGUGAUGGUAGAUGGGUUCAUGUAGGAGUAGAAGCCACUAAACACGCGGUGAGUGCUCAACGCGCUGGCCA

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Structure

        10           20        30         40        50         
CUUCCCUCCUGUGAGAUU---|    U    C   -        U            UGGUA 
                     GCUGU GUGU UUA UGGCUUUU AUUCCUACGUGA     G
                     UGGCG CACA AAU ACCGAAGA UGAGGAUGUACU     A
ACCGGUCGCGCAACUCGUGAG^    -    -   C        -            UGGGU 
       110       100         90         80         70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-135-P2b_5p

mirBase accession

None

Sequence

0- UAUGGCUUUUUAUUCCUACGUGA -23

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Star sequence

Mal-Mir-135-P2b_3p*

mirBase accession

None

Sequence

37- AUGUAGGAGUAGAAGCCACUAA -59

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