Mir-135-P2

MirGeneDB ID

Ami-Mir-135-P2

Family name

MIR-135 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-135-2

Paralogues

Ami-Mir-135-P1 Ami-Mir-135-P4

Orthologues

Aca-Mir-135-P2 Bta-Mir-135-P2 Cfa-Mir-135-P2 Cja-Mir-135-P2 Cli-Mir-135-P2 Cmi-Mir-135-P2 Cpi-Mir-135-P2 Cpo-Mir-135-P2 Dno-Mir-135-P2 Dre-Mir-135-P2a Eca-Mir-135-P2 Ete-Mir-135-P2 Gga-Mir-135-P2 Gja-Mir-135-P2 Gmo-Mir-135-P2a Gmo-Mir-135-P2b Hsa-Mir-135-P2 Laf-Mir-135-P2 Lch-Mir-135-P2 Loc-Mir-135-P2 Mal-Mir-135-P2a Mal-Mir-135-P2b Mdo-Mir-135-P2 Mml-Mir-135-P2 Mmr-Mir-135-P2 Mmu-Mir-135-P2 Mun-Mir-135-P2 Neu-Mir-135-P2 Oan-Mir-135-P2 Ocu-Mir-135-P2 Pab-Mir-135-P2 Pbv-Mir-135-P2 Pma-Mir-135-o2 Rno-Mir-135-P2 Sha-Mir-135-P2 Spt-Mir-135-P2 Sto-Mir-135-P2 Tgu-Mir-135-P2 Tni-Mir-135-P2a Tni-Mir-135-P2b Xla-Mir-135-P2c Xla-Mir-135-P2d Xtr-Mir-135-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017714414.1: 12728185-12728244 [-] UCSC

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

UCUGAUCAAGAUAAAUUCACUCUAGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAAUCAUCAACUAAGAUG

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Structure

        10           20        30        40        50          
UCUGAUCAAGAUAAAUU---|  UCUA                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUAGAAUCAACUACUAAAAA^  UUA-                -            CUGAAA 
.       110       100         90        80         70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ami-Mir-135-P2_5p

mirBase accession

MIMAT0038149

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

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Star sequence

Ami-Mir-135-P2_3p*

mirBase accession

MIMAT0038151

Sequence

38- AUGUAGGGAUGGAAGCCAUGAA -60

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