MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-135-P2a

Family name MIR-135 (all species)
Seed AUGGCUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-135-P1  Tni-Mir-135-P2b  Tni-Mir-135-P4a  Tni-Mir-135-P4b 
Orthologues Aca-Mir-135-P2  Ami-Mir-135-P2  Bta-Mir-135-P2  Cfa-Mir-135-P2  Cli-Mir-135-P2  Cmi-Mir-135-P2  Cpi-Mir-135-P2  Cpo-Mir-135-P2  Dno-Mir-135-P2  Dre-Mir-135-P2a  Ete-Mir-135-P2  Gga-Mir-135-P2  Gja-Mir-135-P2  Gmo-Mir-135-P2a  Hsa-Mir-135-P2  Lch-Mir-135-P2  Loc-Mir-135-P2  Mal-Mir-135-P2a  Mdo-Mir-135-P2  Mml-Mir-135-P2  Mmu-Mir-135-P2  Mun-Mir-135-P2  Oan-Mir-135-P2  Ocu-Mir-135-P2  Pbv-Mir-135-P2  Pma-Mir-135-o2  Rno-Mir-135-P2  Sha-Mir-135-P2  Spt-Mir-135-P2  Sto-Mir-135-P2  Tgu-Mir-135-P2  Xtr-Mir-135-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
13: 5265577-5265638 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGUUUCUCCAUUUAUGCCACUGUGCAUUAUGGCUUUUUUAUUCCUAUGUGAUGAUAAAAAAAUGUUCGUGUAGGAAUCGAAGCCAUGUUACACUUGGUGAGAGAGCGACAGAACAGAAG
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Structure
        10           20        30        40        50        60 
GUGUGUUUCUCCAUUUAU---|   CU   CAU         UUU       UG   UGAUAA 
                     GCCA  GUG   UAUGGCUUU   AUUCCUA  UGA      A
                     UGGU  CAC   GUACCGAAG   UAAGGAU  GCU      A
GAAGACAAGACAGCGAGAGAG^   U-   AUU         C--       GU   UGUAAA 
120       110       100         90          80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-135-P2a_5p (predicted)

mirBase accessionNone
Sequence
0- UAUGGCUUUUUUAUUCCUAUGUGA -24
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Star sequence

Tni-Mir-135-P2a_3p* (predicted)

mirBase accessionNone
Sequence
40- GUGUAGGAAUCGAAGCCAUGUU -62
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