| MirGeneDB ID | Mdo-Mir-135-P2 |
|---|
| Family name |
MIR-135 (all species) |
|---|
| Species |
Gray short-tailed opossum (Monodelphis domestica) |
|---|
| MiRBase ID |
mdo-mir-135a
|
|---|
| Paralogues |
Mdo-Mir-135-P4
|
|---|
| Orthologues |
Aca-Mir-135-P2
Ami-Mir-135-P2
Bta-Mir-135-P2
Cfa-Mir-135-P2
Cja-Mir-135-P2
Cli-Mir-135-P2
Cmi-Mir-135-P2
Cpi-Mir-135-P2
Cpo-Mir-135-P2
Dno-Mir-135-P2
Dre-Mir-135-P2a
Eca-Mir-135-P2
Ete-Mir-135-P2
Gga-Mir-135-P2
Gja-Mir-135-P2
Gmo-Mir-135-P2a
Gmo-Mir-135-P2b
Hsa-Mir-135-P2
Laf-Mir-135-P2
Lch-Mir-135-P2
Loc-Mir-135-P2
Mal-Mir-135-P2a
Mal-Mir-135-P2b
Mml-Mir-135-P2
Mmr-Mir-135-P2
Mmu-Mir-135-P2
Mun-Mir-135-P2
Neu-Mir-135-P2
Oan-Mir-135-P2
Ocu-Mir-135-P2
Pab-Mir-135-P2
Pbv-Mir-135-P2
Pma-Mir-135-o2
Rno-Mir-135-P2
Sha-Mir-135-P2
Spt-Mir-135-P2
Sto-Mir-135-P2
Tgu-Mir-135-P2
Tni-Mir-135-P2a
Tni-Mir-135-P2b
Xla-Mir-135-P2c
Xla-Mir-135-P2d
Xtr-Mir-135-P2
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Chordata
|
|---|
Genome context
(monDom5_add) |
8: 74872662-74872721 [+]
UCSC
Ensembl
|
|---|
| Seed |
AUGGCUU |
|---|
Precursor
(pre-Mir +30nt flank) |
UCCGGUCAAGAUAAAUUCACUCUAGUGUCUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAAGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAUGUCAUCAACUAAGAUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UCCGGUCAAGAUAAAUU---| UCUA C U UAGUAA
CAC GUGU UUAUGGCUUUU AUUCCUAUGUGA \
GUG CAUA AGUACCGAAGG UAGGGAUGUACU U
GUAGAAUCAACUACUGUAAA^ UUA- A - CUGAAA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Dicer cut -1 on both arms. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Mdo-Mir-135-P2_5p |
| mirBase accession | MIMAT0004108 |
|---|
| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-135a-5p
|
|---|
| Star sequence |
Mdo-Mir-135-P2_3p* |
| mirBase accession | MIMAT0026666 |
|---|
| Sequence |
38- AUGUAGGGAUGGAAGCCAUGAA -60
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: mdo-miR-135a-3p
|
|---|
