Mir-135-P2d

MirGeneDB ID

Xla-Mir-135-P2d

Family name

MIR-135 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-135-P2c Xla-Mir-135-P4

Orthologues

Aca-Mir-135-P2 Ami-Mir-135-P2 Bta-Mir-135-P2 Cfa-Mir-135-P2 Cja-Mir-135-P2 Cli-Mir-135-P2 Cmi-Mir-135-P2 Cpi-Mir-135-P2 Cpo-Mir-135-P2 Dno-Mir-135-P2 Eca-Mir-135-P2 Ete-Mir-135-P2 Gga-Mir-135-P2 Gja-Mir-135-P2 Hsa-Mir-135-P2 Laf-Mir-135-P2 Lch-Mir-135-P2 Loc-Mir-135-P2 Mdo-Mir-135-P2 Mml-Mir-135-P2 Mmr-Mir-135-P2 Mmu-Mir-135-P2 Mun-Mir-135-P2 Neu-Mir-135-P2 Oan-Mir-135-P2 Ocu-Mir-135-P2 Pab-Mir-135-P2 Pbv-Mir-135-P2 Pma-Mir-135-o2 Rno-Mir-135-P2 Sha-Mir-135-P2 Spt-Mir-135-P2 Sto-Mir-135-P2 Tgu-Mir-135-P2 Xtr-Mir-135-P2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Chordata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030729.1: 94389028-94389087 [-] UCSC Ensembl

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

UCCGAUCGAGAUUAAUUCACUGUGGUGUUUUAUGGCUUUUUAUUCCUAUGUGAUAGUAAUAAUGUCUCAUGUAGGGAUGGAAGCCAUGAAAUACAUUGUGAAAAGUCAUCAACUAAGAUG

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Structure

        10           20        30        40        50          
UCCGAUCGAGAUUAAUU---|  UGUG                U            UAGUAA 
                    CAC    GUGUUUUAUGGCUUUU AUUCCUAUGUGA      \
                    GUG    CAUAAAGUACCGAAGG UAGGGAUGUACU      U
GUAGAAUCAACUACUGAAAA^  UUA-                -            CUGUAA 
.       110       100         90        80         70

Deep sequencing

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Comment

There is a second Dicer cut -1 on both arms.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-135-P2d_5p

mirBase accession

None

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

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Co-mature sequence

Xla-Mir-135-P2d_3p

mirBase accession

None

Sequence

38- AUGUAGGGAUGGAAGCCAUGAA -60

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