| MirGeneDB ID | Xla-Mir-135-P4 |
|---|
| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-135-P2c
Xla-Mir-135-P2d
|
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| Orthologues |
Aca-Mir-135-P4
Ami-Mir-135-P4
Bta-Mir-135-P4
Cfa-Mir-135-P4
Cli-Mir-135-P4
Cmi-Mir-135-P4
Cpi-Mir-135-P4
Cpo-Mir-135-P4
Dno-Mir-135-P4
Dre-Mir-135-P4a
Dre-Mir-135-P4b
Ete-Mir-135-P4
Gga-Mir-135-P4
Gja-Mir-135-P4
Gmo-Mir-135-P4a
Gmo-Mir-135-P4b
Hsa-Mir-135-P4
Lch-Mir-135-P4
Loc-Mir-135-P4
Mal-Mir-135-P4a
Mal-Mir-135-P4b
Mdo-Mir-135-P4
Mml-Mir-135-P4
Mmu-Mir-135-P4
Mun-Mir-135-P4
Oan-Mir-135-P4
Ocu-Mir-135-P4
Pbv-Mir-135-P4
Rno-Mir-135-P4
Sha-Mir-135-P4
Spt-Mir-135-P4
Sto-Mir-135-P4
Tgu-Mir-135-P4
Tni-Mir-135-P4a
Tni-Mir-135-P4b
Xtr-Mir-135-P4
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NW_016694943.1: 61510-61569 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CCUAAUAAAAGUGUUCCUCCUGCUGAGGUAUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUCCUAAUUCACAUAGGGCAGAAAGCCAUGUGCUGCACAGGGGACAAGCAUCCGUAUGGUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CCUAAUAAAAGUGUUCC---| C A AU UUGCUU
UCCUG UG GGUAUAUGGCUUUUU UCCUAUGUGA \
GGGAC AC UCGUGUACCGAAAGA GGGAUACACU U
ACUGGUAUGCCUACGAACAG^ - G C- UAAUCC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xla-Mir-135-P4_5p |
| mirBase accession | None |
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| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
|---|
| Star sequence |
Xla-Mir-135-P4_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- ACAUAGGGCAGAAAGCCAUGUG -60
Get sequence
|
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