Mir-135-P4

MirGeneDB ID

Xla-Mir-135-P4

Family name

MIR-135 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-135-P2c Xla-Mir-135-P2d

Orthologues

Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cja-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Eca-Mir-135-P4 Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Laf-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmr-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Neu-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pab-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xtr-Mir-135-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(GCF_001663975.1_XLA_v2)

NW_016694943.1: 61510-61569 [+] UCSC Ensembl

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

CCUAAUAAAAGUGUUCCUCCUGCUGAGGUAUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUCCUAAUUCACAUAGGGCAGAAAGCCAUGUGCUGCACAGGGGACAAGCAUCCGUAUGGUCA

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Structure

        10           20        30        40        50          
CCUAAUAAAAGUGUUCC---|    C  A               AU          UUGCUU 
                    UCCUG UG GGUAUAUGGCUUUUU  UCCUAUGUGA      \
                    GGGAC AC UCGUGUACCGAAAGA  GGGAUACACU      U
ACUGGUAUGCCUACGAACAG^    -  G               C-          UAAUCC 
.       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	Em	Em	He	Ki	Re	St	St

Mature sequence

Xla-Mir-135-P4_5p

mirBase accession

None

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

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Star sequence

Xla-Mir-135-P4_3p*

mirBase accession

None

Sequence

38- ACAUAGGGCAGAAAGCCAUGUG -60

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