MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-135-P4

Family name MIR-135 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-135-P1  Loc-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(LepOcu1)		 LG3: 34097469-34097529 [+] Ensembl
Seed AUGGCUU
Precursor
(pre-Mir +30nt flank)		 
UUCUAAGCUUGUUUGAUCACUGCUGUGCUCUAUGGCUUUCUAUUCCUAUGUGAUCUUAUGUAUUAUCUCAUGUAGGGUUCAAAGCCAUUGGGUACAGAGUGGAAACUCGGCUAAGGAGAGA
Get precursor sequence
Structure
        10           20        30        40        50        60
UUCUAAGCUUGUUUGAU---|   G        U        CUAU          UCUUAU 
                    CACU CUGUGCUC AUGGCUUU    UCCUAUGUGA      G
                    GUGA GACAUGGG UACCGAAA    GGGAUGUACU      U
AGAGAGGAAUCGGCUCAAAG^   -        U        CUU-          CUAUUA 
 .       110       100         90        80         70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-135-P4_5p
mirBase accessionNone
Sequence 
0- UAUGGCUUUCUAUUCCUAUGUGA -23
Get sequence
Star sequence

Loc-Mir-135-P4_3p*
mirBase accessionNone
Sequence 
39- AUGUAGGGUUCAAAGCCAUUGG -61
Get sequence