MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-135-P4a

Family name MIR-135 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-135c-1
Paralogues Gmo-Mir-135-P1  Gmo-Mir-135-P2a  Gmo-Mir-135-P2b  Gmo-Mir-135-P4b 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cja-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Eca-Mir-135-P4  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Hsa-Mir-135-P4  Laf-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmr-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Neu-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pab-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Chordata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2161: 18287-18347 [-] UCSC Ensembl
Seed AUGGCUU
Precursor
(pre-Mir +30nt flank)		 
GGGCGACCCGGCUGGAUCACUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUACUCUGCCAUGUCACAUAGGGUCUAAAGCCAUUGGUUACAGAGUGGAACUUCGACGCACGGGCGU
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Structure
        10           20        30        40        50        60
GGGCGACCCGGCUGGAU---|   G     UUUU        CUAU          UUUACU 
                    CACU CUGUG    AUGGCUUU    UCCUAUGUGA      C
                    GUGA GACAU    UACCGAAA    GGGAUACACU      U
UGCGGGCACGCAGCUUCAAG^   -     UGGU        UCU-          GUACCG 
 .       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-135-P4a_5p
mirBase accessionMIMAT0044130
Sequence 
0- UAUGGCUUUCUAUUCCUAUGUGA -23
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Star sequence

Gmo-Mir-135-P4a_3p*
mirBase accessionMIMAT0044178
Sequence 
39- ACAUAGGGUCUAAAGCCAUUGG -61
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