| MirGeneDB ID | Gmo-Mir-135-P1 |
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| Family name |
MIR-135 (all species) |
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| Seed |
AUGGCUU |
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| Species |
Cod (Gadus morhua) |
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| MiRBase ID |
gmo-mir-135b
|
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| Paralogues |
Gmo-Mir-135-P2a
Gmo-Mir-135-P2b
Gmo-Mir-135-P4a
Gmo-Mir-135-P4b
|
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| Orthologues |
Aca-Mir-135-P1
Ami-Mir-135-P1
Bta-Mir-135-P1
Cfa-Mir-135-P1
Cli-Mir-135-P1
Cmi-Mir-135-P1
Cpi-Mir-135-P1
Cpo-Mir-135-P1
Dno-Mir-135-P1
Dre-Mir-135-P1
Ete-Mir-135-P1
Gga-Mir-135-P1
Gja-Mir-135-P1
Hsa-Mir-135-P1
Lch-Mir-135-P1
Loc-Mir-135-P1
Mal-Mir-135-P1
Mml-Mir-135-P1
Mmu-Mir-135-P1
Mun-Mir-135-P1
Oan-Mir-135-P1
Ocu-Mir-135-P1
Pbv-Mir-135-P1
Pma-Mir-135-o1
Rno-Mir-135-P1
Spt-Mir-135-P1
Sto-Mir-135-P1
Tgu-Mir-135-P1
Tni-Mir-135-P1
|
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| Node of Origin (locus) |
Gnathostomata
|
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| Node of Origin (family) |
Chordata
|
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Genome context
(Gadus_morhua.gadMor1.dna.toplevel) |
contig475703: 148-205 [+]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UCCACAGUCUCCCUGCUGCCCAGUGCUCUGUAUGGCUUCUUAUUCCUAUCUGACUGUUGAUGGCUCAUAUAGGGAUGGAAGCCAUGCAGUGCGCUGGAGUCUACACACACCGGAGCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCCACAGUCUCCCUGCU- -| U U C CUGUU
GC CCAGUGC CUGUAUGGCUUCU AUUCCUAU UGA \
UG GGUCGCG GACGUACCGAAGG UAGGGAUA ACU G
CACGAGGCCACACACAUC A^ U - U CGGUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Gmo-Mir-135-P1_5p |
| mirBase accession | MIMAT0044053 |
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| Sequence |
0- UAUGGCUUCUUAUUCCUAUCUGA -23
Get sequence
|
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| Star sequence |
Gmo-Mir-135-P1_3p* |
| mirBase accession | MIMAT0044054 |
|---|
| Sequence |
36- AUAUAGGGAUGGAAGCCAUGCA -58
Get sequence
|
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