MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-135-P1

Family name MIR-135 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-135a
Paralogues Eca-Mir-135-P2  Eca-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cja-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Laf-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmr-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pab-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tgu-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009163.1: 36933009-36933068 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-135-P1)		 Mir-135-P1 CM009163.1: 36933009-36933068 [+] UCSC Ensembl
Let-7-P2c3 CM009163.1: 36958030-36958107 [+] UCSC Ensembl
Seed AUGGCUU
Precursor
(pre-Mir +30nt flank)		 
GCAGGAGCAGCCCCAGGCCUCGCUGUUCUCUAUGGCUUUUUAUUCCUAUGUGAUUCUACUGCUCACUCAUAUAGGGAUUGGAGCCGUGGCGCACGGCGGGGGUGGCCAGCGGAGGGCUCG
Get precursor sequence
Structure
        10          20        30        40        50          
GCAGGAGCAGCCCCAGG--|        UCU          UU            UUCUAC 
                   CCUCGCUGU   CUAUGGCUUU  AUUCCUAUGUGA      \
                   GGGGCGGCA   GGUGCCGAGG  UAGGGAUAUACU      U
GCUCGGGAGGCGACCGGUG^        CGC          U-            CACUCG 
.       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-135-P1_5p
mirBase accessionMIMAT0013078
Sequence 
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Eca-Mir-135-P1_3p* (predicted)
mirBase accessionNone
Sequence 
38- AUAUAGGGAUUGGAGCCGUGGC -60
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