MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-135-P1

Family name MIR-135 (all species)
Seed AUGGCUU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-135b
Paralogues Tgu-Mir-135-P2  Tgu-Mir-135-P4 
Orthologues Aca-Mir-135-P1  Ami-Mir-135-P1  Bta-Mir-135-P1  Cfa-Mir-135-P1  Cli-Mir-135-P1  Cmi-Mir-135-P1  Cpi-Mir-135-P1  Cpo-Mir-135-P1  Dno-Mir-135-P1  Dre-Mir-135-P1  Ete-Mir-135-P1  Gga-Mir-135-P1  Gja-Mir-135-P1  Gmo-Mir-135-P1  Hsa-Mir-135-P1  Lch-Mir-135-P1  Loc-Mir-135-P1  Mal-Mir-135-P1  Mml-Mir-135-P1  Mmu-Mir-135-P1  Mun-Mir-135-P1  Oan-Mir-135-P1  Ocu-Mir-135-P1  Pbv-Mir-135-P1  Pma-Mir-135-o1  Rno-Mir-135-P1  Spt-Mir-135-P1  Sto-Mir-135-P1  Tni-Mir-135-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(TaeGut1_add)
12: 14220723-14220783 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-135-P1)
Mir-135-P1 12: 14220723-14220783 [+] UCSC Ensembl
Let-7-P2c3 12: 14244549-14244626 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCAUGGAGCAUCUCCCAGCCUGCCGUCUUGUAUGGCUUUUUAUUCCUAUGUGAUUAUACAUCCCACUUCAUAUAGGGAUUGAAGCCGUGCAGUACGCCGGGGUCCUACGGCAGAGAGAGCC
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Structure
        10          20        30        40        50        60
GCAUGGAGCAUCUCCCAG--|   C   C            UU            UUAUAC 
                    CCUG CGU UUGUAUGGCUUU  AUUCCUAUGUGA      A
                    GGGC GCA GACGUGCCGAAG  UAGGGAUAUACU      U
CCGAGAGAGACGGCAUCCUG^   C   U            U-            UCACCC 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-135-P1_5p

mirBase accessionMIMAT0014560
Sequence
0- UAUGGCUUUUUAUUCCUAUGUGA -23
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Star sequence

Tgu-Mir-135-P1_3p*

mirBase accessionNone
Sequence
39- AUAUAGGGAUUGAAGCCGUGCA -61
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