MirGeneDB 2.1

MirGeneDB ID

Mmu-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species House mouse (Mus musculus)
MiRBase ID mmu-mir-135b
Paralogues Mmu-Mir-135-P1  Mmu-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mun-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pbv-Mir-135-P4  Rno-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(mm10)
chr1: 132198103-132198163 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCACUGGACCCCUCCGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGCUCCGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCAAGCUCCUGCACAGCU
Get precursor sequence
Structure
        10         20         30        40        50        60
GCCACUGGACCCCUCCG-    -|                  CAU          UUGCUG 
                  CUCU GCUGUGGCCUAUGGCUUUU   UCCUAUGUGA      C
                  GGGA UGACAUCGGGUACCGAAAA   GGGAUGUACU      U
UCGACACGUCCUCGAACG    G^                  UC-          CAAGCC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br Br Ce Em Em He In Ki Li Lu Mu Ov Pa Sk Sp Sp Te
Mature sequence

Mmu-Mir-135-P4_5p

mirBase accessionMIMAT0000612
Sequence
0- UAUGGCUUUUCAUUCCUAUGUGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000612
TargetScanVert: mmu-miR-135b-5p
miRDB: MIMAT0000612
Star sequence

Mmu-Mir-135-P4_3p*

mirBase accessionMIMAT0017044
Sequence
39- AUGUAGGGCUAAAAGCCAUGGG -61
Get sequence
Proposed targets TargetScanVert: mmu-miR-135b-3p
miRDB: MIMAT0017044