Mir-135-P4

MirGeneDB ID

Oan-Mir-135-P4

Family name

MIR-135 (all species)

Species

Platypus (Ornithorhynchus anatinus)

MiRBase ID

oan-mir-135b-1

Paralogues

Oan-Mir-135-P1 Oan-Mir-135-P2

Orthologues

Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cja-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Eca-Mir-135-P4 Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Laf-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmr-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Neu-Mir-135-P4 Ocu-Mir-135-P4 Pab-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xla-Mir-135-P4 Xtr-Mir-135-P4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Chordata

Genome context
(mOrnAna1.p.v1_plustraces)

NC_041734.1: 61618119-61618179 [-]

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

CGGAUCCUCCCUUGGCUCUCUGCUGUGGCCUAUGGCUUUUUAUUCCUAUGUGAUUGCUGCUUUGAACUCAUGUAGGGCUGAAAGCCAUGGGCUACAGAGAGGGGAGAGACACCGCCACCGC

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Structure

        10           20        30        40        50        60
CGGAUCCUCCCUUGGCU---|   G                  UAU          UUGCUG 
                    CUCU CUGUGGCCUAUGGCUUUU   UCCUAUGUGA      C
                    GAGA GACAUCGGGUACCGAAAG   GGGAUGUACU      U
CGCCACCGCCACAGAGAGGG^   -                  UC-          CAAGUU 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Yes

Motifs

Tissue expression

Br	Ce	He	Ki	Te

Mature sequence

Oan-Mir-135-P4_5p

mirBase accession

MIMAT0006870

Sequence

0- UAUGGCUUUUUAUUCCUAUGUGA -23

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Star sequence

Oan-Mir-135-P4_3p*

mirBase accession

MIMAT0006871

Sequence

39- AUGUAGGGCUGAAAGCCAUGGG -61

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