| MirGeneDB ID | Lch-Mir-135-P4 |
|---|---|
| Family name | MIR-135 (all species) |
| Seed | AUGGCUU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-135-P1 Lch-Mir-135-P2 |
| Orthologues | Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xla-Mir-135-P4 Xtr-Mir-135-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Chordata |
| Genome context (LatCha1_add) |
JH126599.1: 251546-251606 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | UUGACCAUGAAAAGAAUCCCUGUUGUGUUCUAUGGCUUUUUAUUCCUAUGUGAUUACUGUUUCUAACUCAUGUAGGGUUGAAAGCCAUGGGCUACUCAGUGGGACAUCUUCUGAUCUACAAGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUGACCAUGAAAAGAAUC UG U --| UAU UUACUG CC UUG GU UCUAUGGCUUUU UCCUAUGUGA U GG GAC CA GGGUACCGAAAG GGGAUGUACU U AACAUCUAGUCUUCUACA GU U UC^ UU- CAAUCU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-135-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
| Star sequence | Lch-Mir-135-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- AUGUAGGGUUGAAAGCCAUGGG -61
Get sequence
|
