MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-135-P4

Family name MIR-135 (all species)
Seed AUGGCUU
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-135b
Paralogues Rno-Mir-135-P1  Rno-Mir-135-P2 
Orthologues Aca-Mir-135-P4  Ami-Mir-135-P4  Bta-Mir-135-P4  Cfa-Mir-135-P4  Cli-Mir-135-P4  Cmi-Mir-135-P4  Cpi-Mir-135-P4  Cpo-Mir-135-P4  Dno-Mir-135-P4  Dre-Mir-135-P4a  Dre-Mir-135-P4b  Ete-Mir-135-P4  Gga-Mir-135-P4  Gja-Mir-135-P4  Gmo-Mir-135-P4a  Gmo-Mir-135-P4b  Hsa-Mir-135-P4  Lch-Mir-135-P4  Loc-Mir-135-P4  Mal-Mir-135-P4a  Mal-Mir-135-P4b  Mdo-Mir-135-P4  Mml-Mir-135-P4  Mmu-Mir-135-P4  Mun-Mir-135-P4  Oan-Mir-135-P4  Ocu-Mir-135-P4  Pbv-Mir-135-P4  Sha-Mir-135-P4  Spt-Mir-135-P4  Sto-Mir-135-P4  Tgu-Mir-135-P4  Tni-Mir-135-P4a  Tni-Mir-135-P4b  Xla-Mir-135-P4  Xtr-Mir-135-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Chordata
Genome context
(rn6)		 chr13: 48977001-48977061 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCACUGGACCCCUCCGCUCUGCUGUGGCCUAUGGCUUUUCAUUCCUAUGUGAUUGCUGUUCCGAACUCAUGUAGGGCUAAAAGCCAUGGGCUACAGUGAGGGGCAAGCUCCUGCACAACU
Get precursor sequence
Structure
        10         20         30        40        50        60
GCCACUGGACCCCUCCG-    -|                  CAU          UUGCUG 
                  CUCU GCUGUGGCCUAUGGCUUUU   UCCUAUGUGA      U
                  GGGA UGACAUCGGGUACCGAAAA   GGGAUGUACU      U
UCAACACGUCCUCGAACG    G^                  UC-          CAAGCC 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-135-P4_5p
mirBase accessionMIMAT0000611
Sequence 
0- UAUGGCUUUUCAUUCCUAUGUGA -23
Get sequence
Proposed targets microrna.org: MIMAT0000611
TargetScanVert: rno-miR-135b-5p
miRDB: MIMAT0000611
Star sequence

Rno-Mir-135-P4_3p*
mirBase accessionMIMAT0017043
Sequence 
39- AUGUAGGGCUAAAAGCCAUGGG -61
Get sequence
Proposed targets TargetScanVert: rno-miR-135b-3p
miRDB: MIMAT0017043