| MirGeneDB ID | Spt-Mir-135-P4 |
|---|---|
| Family name | MIR-135 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-135-P1 Spt-Mir-135-P2 |
| Orthologues | Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cja-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Dre-Mir-135-P4b Eca-Mir-135-P4 Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Gmo-Mir-135-P4b Hsa-Mir-135-P4 Laf-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mal-Mir-135-P4a Mal-Mir-135-P4b Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmr-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Neu-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pab-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Tni-Mir-135-P4b Xla-Mir-135-P4 Xtr-Mir-135-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Chordata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01004435.1: 755813-755873 [+] UCSC Ensembl |
| Seed | AUGGCUU |
| Precursor (pre-Mir +30nt flank) |
CUUAUCCUCGGUAAGCCUUCUGCUGUGGUCUAUGGCUUUUUAUUCCUAUGUGAUUGCUUUUCUUAACUCAUGUAGGGCUGAAAGCCAUGGGCUACACAGAGGAAGACUCCACCUCCUUGGGGet precursor sequence |
| Structure | 10 20 30 40 50 60 CUUAUCCUCGGUAAGCC---| C UAU UUGCUU UUCUG UGUGGUCUAUGGCUUUU UCCUAUGUGA U GAGAC ACAUCGGGUACCGAAAG GGGAUGUACU U GGGUUCCUCCACCUCAGAAG^ - UC- CAAUUC . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-135-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UAUGGCUUUUUAUUCCUAUGUGA -23
Get sequence
|
| Star sequence | Spt-Mir-135-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- AUGUAGGGCUGAAAGCCAUGGG -61
Get sequence
|
