Mir-135-P4a

MirGeneDB ID

Mal-Mir-135-P4a

Family name

MIR-135 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-135-P1 Mal-Mir-135-P2a Mal-Mir-135-P2b Mal-Mir-135-P4b

Orthologues

Aca-Mir-135-P4 Ami-Mir-135-P4 Bta-Mir-135-P4 Cfa-Mir-135-P4 Cja-Mir-135-P4 Cli-Mir-135-P4 Cmi-Mir-135-P4 Cpi-Mir-135-P4 Cpo-Mir-135-P4 Dno-Mir-135-P4 Dre-Mir-135-P4a Eca-Mir-135-P4 Ete-Mir-135-P4 Gga-Mir-135-P4 Gja-Mir-135-P4 Gmo-Mir-135-P4a Hsa-Mir-135-P4 Laf-Mir-135-P4 Lch-Mir-135-P4 Loc-Mir-135-P4 Mdo-Mir-135-P4 Mml-Mir-135-P4 Mmr-Mir-135-P4 Mmu-Mir-135-P4 Mun-Mir-135-P4 Neu-Mir-135-P4 Oan-Mir-135-P4 Ocu-Mir-135-P4 Pab-Mir-135-P4 Pbv-Mir-135-P4 Rno-Mir-135-P4 Sha-Mir-135-P4 Spt-Mir-135-P4 Sto-Mir-135-P4 Tgu-Mir-135-P4 Tni-Mir-135-P4a Xla-Mir-135-P4 Xtr-Mir-135-P4

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Chordata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884929.1: 82863-82923 [+] UCSC Ensembl

Seed

AUGGCUU

Precursor
(pre-Mir +30nt flank)

UACCGUCAUGACUGGCUCACUGCUGUGUUUUAUGGCUUUCUAUUCCUAUGUGAUUUUCUAUAGCAUGUCACAUAGGGUCUAAAGCCAUUGGGUACAGAGUGGGAGAUCUCCAGACAAGGAU

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Structure

        10           20        30        40        50        60
UACCGUCAUGACUGGCU---|   G     UU U        CUAU          UUUUCU 
                    CACU CUGUG  U AUGGCUUU    UCCUAUGUGA      A
                    GUGA GACAU  G UACCGAAA    GGGAUACACU      U
UAGGAACAGACCUCUAGAGG^   -     GG U        UCU-          GUACGA 
 .       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-135-P4a_5p

mirBase accession

None

Sequence

0- UAUGGCUUUCUAUUCCUAUGUGA -23

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Star sequence

Mal-Mir-135-P4a_3p*

mirBase accession

None

Sequence

39- ACAUAGGGUCUAAAGCCAUUGG -61

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