| MirGeneDB ID | Ebu-Mir-135-P9 |
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| Family name |
MIR-135 (all species) |
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| Species |
Inshore hagfish (Eptatretus burgeri) |
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| MiRBase ID |
|
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| Paralogues |
Ebu-Mir-135-P10
|
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| Orthologues |
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| Node of Origin (locus) |
E. burgeri
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| Node of Origin (family) |
Chordata
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Genome context
(Eburgeri_3) |
FYBX02000030.1: 2040214-2040279 [+]
UCSC
Ensembl
|
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| Seed |
AUGGCUU |
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Precursor
(pre-Mir +30nt flank) |
CAUGGGGAUGCUAUCCCUGCUGUGGCUUUUUAUGGCUUUUUAUUCCUACGUGAUGAGCAGAACUUGCAAGCCCCACGUAGGGGAGGAAGCCAUGGACAGCUCAGCGGAAUUGUCAGCGGAAGCAAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAUGGGGAUGCUAUCCC---| U U A AUGAGCAGAA
UGCUG GGCU UUUAUGGCUUUUU UUCCUACGUG \
GCGAC UCGA AGGUACCGAAGGA GGGGAUGCAC C
GAACGAAGGCGACUGUUAAG^ - C - CCCGAACGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ebu-Mir-135-P9_5p |
| mirBase accession | None |
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| Sequence |
0- UAUGGCUUUUUAUUCCUACGUGA -23
Get sequence
|
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| Star sequence |
Ebu-Mir-135-P9_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
44- ACGUAGGGGAGGAAGCCAUGGA -66
Get sequence
|
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