MirGeneDB 3.0
MirGeneDB ID

Cin-Mir-135-P8

Family name MIR-135 (all species)
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-135
Paralogues Cin-Mir-135-P7 
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) Chordata
Genome context
(ci3)		 HT000116.1: 71231-71286 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-135-P8)		 Mir-135-P7 HT000116.1: 70787-70845 [+] UCSC Ensembl
Mir-135-P8 HT000116.1: 71231-71286 [+] UCSC Ensembl
Seed AUGGCUU
Precursor
(pre-Mir +30nt flank)		 
UCUUUACCAGUAUUGGGUGUUUAGGCUCUUUAUGGCUUUCUUUUCCUGUGUGACGUCAUAUCUCUCACAGUAAAGUAAGCCAUUAUCAGCUGGACCCACAGUCAGCGGUAAGAUCU
Get precursor sequence
Structure
        10           20        30        40        50        
UCUUUACCAGUAUUGGGU---|     G  CUUU       U    UC     U  CGUC 
                     GUUUAG CU    AUGGCUU CUUU  CUGUG GA    \
                     CAGGUC GA    UACCGAA GAAA  GACAC CU    A
UCUAGAAUGGCGACUGACACC^     -  CUAU       U    U-     U  CUAU 
    110       100        90         80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-135-P8_5p
mirBase accessionMIMAT0016409
Sequence 
0- UAUGGCUUUCUUUUCCUGUGUGA -23
Get sequence
Star sequence

Cin-Mir-135-P8_3p*
mirBase accessionMIMAT0016410
Sequence 
34- UCACAGUAAAGUAAGCCAUUAU -56
Get sequence