| MirGeneDB ID | Cli-Mir-9643 |
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| Family name |
MIR-9643 (all species) |
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| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-9643
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. livia
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| Node of Origin (family) |
C. livia
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Genome context
(colLiv2) |
scaffold182: 66204-66259 [+]
|
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| Seed |
GCGGCCG |
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Precursor
(pre-Mir +30nt flank) |
UGUGGUACCGAUCCUGUGGUACCGACCCUGCGCGGCCGGUACUGAUCCUGCAGUACCAACCCUGUGCGGCCGGUACUGACCCUGCAUGGCUGGUACCAAUCCUGCACGAUCAAUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGUGGUACCGAUCCUGU--| A C C C AUC GUACC
GGUACCG CC UGCG GG CGGUACUG CUGCA A
CCAUGGU GG ACGU CC GUCAUGGC GGCGU A
CCUAACUAGCACGUCCUAA^ C U C A C-- GUCCC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Cli-Mir-9643_5p* |
| mirBase accession | MIMAT0038779 |
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| Sequence |
0- CGCGGCCGGUACUGAUCCUGCA -22
Get sequence
|
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| Mature sequence |
Cli-Mir-9643_3p |
| mirBase accession | MIMAT0038780 |
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| Sequence |
34- UGCGGCCGGUACUGACCCUGCA -56
Get sequence
|
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