MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-204-P1

Family name MIR-204 (all species)
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-204-2
Paralogues Cli-Mir-204-P2  Cli-Mir-204-P4 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cja-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Eca-Mir-204-P1  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Laf-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1a  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmr-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Neu-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pab-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1a  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold506: 653116-653173 [+]
Seed UCCCUUU
Precursor
(pre-Mir +30nt flank)		 
AAGGCUACUGAGACCAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCCAUCGGCCAGCCA
Get precursor sequence
Structure
        10          20        30        40        50         
AAGGCUACUGAGACCAUG--|   CUG     U         CA    A     GGAGAU 
                    UGAC   UGGGC UCCCUUUGU  UCCU UGCCU      \
                    GCUG   ACUCG AGGGAAACG  AGGG ACGGA      C
ACCGACCGGCUACCUUCUCU^   UCG     U         AC    -     GUGACA 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-204-P1_5p
mirBase accessionMIMAT0038580
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
Star sequence

Cli-Mir-204-P1_3p*
mirBase accessionMIMAT0038582
Sequence 
37- GCAGGGACAGCAAAGGGAUGC -58
Get sequence