MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-204-P1

Family name MIR-204 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cja-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Eca-Mir-204-P1  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Laf-Mir-204-P1  Lch-Mir-204-P1  Mal-Mir-204-P1a  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmr-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Neu-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pab-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1a  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG3: 53892358-53892415 [+] Ensembl
Seed UCCCUUU
Precursor
(pre-Mir +30nt flank)		 
AAAAAUGCUCACAUCAUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGUGGUAGUGAUAAGGCAGGGACAGCAAAGGGGUGCUCAGCUGUCACCACUAACUUCAUUAGACUC
Get precursor sequence
Structure
        10          20        30        40        50         
AAAAAUGCUCACAUCAU--|    CUG     U         CA    A     GGUGGU 
                   GUGAC   UGGGU UCCCUUUGU  UCCU UGCCU      \
                   CACUG   ACUCG GGGGAAACG  AGGG ACGGA      A
CUCAGAUUACUUCAAUCAC^    UCG     U         AC    -     AUAGUG 
      110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-204-P1_5p
mirBase accessionNone
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
Get sequence
Star sequence

Loc-Mir-204-P1_3p* (predicted)
mirBase accessionNone
Sequence 
37- GCAGGGACAGCAAAGGGGUGC -58
Get sequence