Mir-204-P1b

MirGeneDB ID

Gmo-Mir-204-P1b

Family name

MIR-204 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-204-1

Paralogues

Gmo-Mir-204-P1a Gmo-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Xtr-Mir-204-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_530: 6574-6631 [+] UCSC Ensembl

Seed

UCCCUUU

Precursor
(pre-Mir +30nt flank)

GUGUGGGUUCCCCUGAUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGAGCUUUCAGCAAGGCAGGGACAGCAAAGGGAAGCUCAGCUGUCACCACUUGCUUCAAGCUCCCA

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Structure

        10          20        30        40        50         
GUGUGGGUUCCCCUGAU--|    CUG               CA    A     GGAGCU 
                   GUGAC   UGGGUUUCCCUUUGU  UCCU UGCCU      \
                   CACUG   ACUCGAAGGGAAACG  AGGG ACGGA      U
ACCCUCGAACUUCGUUCAC^    UCG               AC    -     ACGACU 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-204-P1b_5p

mirBase accession

MIMAT0044029

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Gmo-Mir-204-P1b_3p*

mirBase accession

None

Sequence

37- GCAGGGACAGCAAAGGGAAGC -58

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