Mir-204-P1

MirGeneDB ID

Gga-Mir-204-P1

Family name

MIR-204 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-204-2

Paralogues

Gga-Mir-204-P2 Gga-Mir-204-P4

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Dre-Mir-204-P1b Ebu-Mir-204 Eca-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Gmo-Mir-204-P1b Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xla-Mir-204-P1c Xla-Mir-204-P1d Xtr-Mir-204-P1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

10: 6140988-6141045 [+] UCSC Ensembl

Seed

UCCCUUU

Precursor
(pre-Mir +30nt flank)

GAGACUACUGAGACUGUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCCAUCGGCCAGCCA

Get precursor sequence

Structure

        10          20        30        40        50         
GAGACUACUGAGACUGUG--|   CUG     U         CA    A     GGAGAU 
                    UGAC   UGGGC UCCCUUUGU  UCCU UGCCU      \
                    GCUG   ACUCG AGGGAAACG  AGGG ACGGA      C
ACCGACCGGCUACCUUCUCU^   UCG     U         AC    -     GUGACA 
      110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-204-P1_5p

mirBase accession

MIMAT0001156

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

Get sequence

Proposed targets

TargetScanVert: gga-miR-204
miRDB: MIMAT0001156

Star sequence

Gga-Mir-204-P1_3p*

mirBase accession

None

Sequence

37- GCAGGGACAGCAAAGGGAUGC -58

Get sequence