MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-204-P1d

Family name MIR-204 (all species)
Seed UCCCUUU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-204-P1c  Xla-Mir-204-P2a  Xla-Mir-204-P2b 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Hsa-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Xtr-Mir-204-P1 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030729.1: 55545431-55545488 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGAGGACCUUAACAGUGUGACCCAUGGGCUUCCCUUUGUCAUCCUAUGCCUGAGAAUACUGGAGAGGCAGGGACAGCAAAGGGAUGCUCAGAAUUCACCCACUGCACCGGAUACACC
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Structure
        10          20        30        40        50         
CAGAGGACCUUAACAGU--|   CCCA     U         CA    A     GAGAAU 
                   GUGA    UGGGC UCCCUUUGU  UCCU UGCCU      \
                   CACU    ACUCG AGGGAAACG  AGGG ACGGA      A
CCACAUAGGCCACGUCACC^   UAAG     U         AC    -     GAGGUC 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Eg He Re St St St St
Mature sequence

Xla-Mir-204-P1d_5p
mirBase accessionNone
Sequence 
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Xla-Mir-204-P1d_3p*
mirBase accessionNone
Sequence 
37- GCAGGGACAGCAAAGGGAUGC -58
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