MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-204-P1

Family name MIR-204 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-211
Paralogues Eca-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cja-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Laf-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1a  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmr-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Neu-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pab-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1a  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009148.1: 109178768-109178825 [-] UCSC Ensembl
Seed UCCCUUU
Precursor
(pre-Mir +30nt flank)		 
CGACUUCACCUGGCCAUGUGACUUGUGGGCUUCCCUUUGUCAUCCUUUGCCUAGGGCUCUGAGUGGGGCAGGGACUGCAAAGGGGUGCUCAGUUGUCACCUCUCACAGCACGGAGCUU
Get precursor sequence
Structure
        10          20        30        40        50         
CGACUUCACCUGGCCAU--|    UUG     U         CA     U    AGGGCU 
                   GUGAC   UGGGC UCCCUUUGU  UCCUU GCCU      \
                   CACUG   ACUCG GGGGAAACG  AGGGA CGGG      C
UUCGAGGCACGACACUCUC^    UUG     U         UC     -    GUGAGU 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-204-P1_5p
mirBase accessionMIMAT0012901
Sequence 
0- UUCCCUUUGUCAUCCUUUGCCU -22
Get sequence
Star sequence

Eca-Mir-204-P1_3p*
mirBase accessionNone
Sequence 
37- GCAGGGACUGCAAAGGGGUGC -58
Get sequence