MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-204-P1a

Family name MIR-204 (all species)
Seed UCCCUUU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-204-1
Paralogues Gmo-Mir-204-P1b  Gmo-Mir-204-P2 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Hsa-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Xtr-Mir-204-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_530: 6574-6631 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUGUGGGUUCCCCUGAUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGAGCUUUCAGCAAGGCAGGGACAGCAAAGGGAAGCUCAGCUGUCACCACUUGCUUCAAGCUCCCA
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Structure
        10          20        30        40        50         
GUGUGGGUUCCCCUGAU--|    CUG               CA    A     GGAGCU 
                   GUGAC   UGGGUUUCCCUUUGU  UCCU UGCCU      \
                   CACUG   ACUCGAAGGGAAACG  AGGG ACGGA      U
ACCCUCGAACUUCGUUCAC^    UCG               AC    -     ACGACU 
      110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-204-P1a_5p

mirBase accessionMIMAT0044029
Sequence
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Gmo-Mir-204-P1a_3p*

mirBase accessionNone
Sequence
37- GCAGGGACAGCAAAGGGAAGC -58
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