Mir-204-P1a

MirGeneDB ID

Gmo-Mir-204-P1a

Family name

MIR-204 (all species)

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-204-2

Paralogues

Gmo-Mir-204-P1b Gmo-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mal-Mir-204-P1a Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xtr-Mir-204-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_2132: 114227-114284 [-] UCSC Ensembl

Seed

UCCCUUU

Precursor
(pre-Mir +30nt flank)

AGAUCUGGAUGGCCUCUGUGACCUUUGAGUUUCCCUUUGUCAUCCUAUGCCUGGGGCAUCCAAUAAGGCAGGGACAGCAAAGGGACGCUCAGCUGUCACCCCUGACCCCACUCCCUCG

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Structure

        10          20        30        40        50         
AGAUCUGGAUGGCCUCU--|    CU      U         CA    A     GGGGCA 
                   GUGAC  UUGAGU UCCCUUUGU  UCCU UGCCU      \
                   CACUG  GACUCG AGGGAAACG  AGGG ACGGA      U
GCUCCCUCACCCCAGUCCC^    UC      C         AC    -     AUAACC 
      110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-204-P1a_5p

mirBase accession

MIMAT0044029

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Gmo-Mir-204-P1a_3p*

mirBase accession

None

Sequence

37- GCAGGGACAGCAAAGGGACGC -58

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