MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-204-P1

Family name MIR-204 (all species)
Seed UCCCUUU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-204-2
Paralogues Tgu-Mir-204-P2  Tgu-Mir-204-P4 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Lch-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1b  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tni-Mir-204-P1b  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
10: 6213146-6213203 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGCUACUGAGACCAUGUGACCUGUGGGCUUCCCUUUGUCAUCCUAUGCCUGGAGAUCACAGUGAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCGUCUCUUCCAUCGGCCAACCA
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Structure
        10          20        30        40        50         
AAGGCUACUGAGACCAUG--|   CUG     U         CA    A     GGAGAU 
                    UGAC   UGGGC UCCCUUUGU  UCCU UGCCU      \
                    GCUG   ACUCG AGGGAAACG  AGGG ACGGA      C
ACCAACCGGCUACCUUCUCU^   UCG     U         AC    -     GUGACA 
      110       100        90        80         70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-204-P1_5p

mirBase accessionMIMAT0014570
Sequence
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Tgu-Mir-204-P1_3p* (predicted)

mirBase accessionNone
Sequence
37- GCAGGGACAGCAAAGGGAUGC -58
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