Mir-204-P1a

MirGeneDB ID

Mal-Mir-204-P1a

Family name

MIR-204 (all species)

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-204-P2

Orthologues

Aca-Mir-204-P1 Ami-Mir-204-P1 Bta-Mir-204-P1 Cfa-Mir-204-P1 Cja-Mir-204-P1 Cli-Mir-204-P1 Cmi-Mir-204-P1 Cpi-Mir-204-P1 Cpo-Mir-204-P1 Dno-Mir-204-P1 Dre-Mir-204-P1a Ebu-Mir-204 Eca-Mir-204-P1 Gga-Mir-204-P1 Gja-Mir-204-P1 Gmo-Mir-204-P1a Hsa-Mir-204-P1 Laf-Mir-204-P1 Lch-Mir-204-P1 Loc-Mir-204-P1 Mdo-Mir-204-P1 Mml-Mir-204-P1 Mmr-Mir-204-P1 Mmu-Mir-204-P1 Mun-Mir-204-P1 Neu-Mir-204-P1 Oan-Mir-204-P1 Ocu-Mir-204-P1 Pab-Mir-204-P1 Pbv-Mir-204-P1 Pma-Mir-204 Rno-Mir-204-P1 Sha-Mir-204-P1 Spt-Mir-204-P1 Sto-Mir-204-P1 Tgu-Mir-204-P1 Tni-Mir-204-P1a Xtr-Mir-204-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884906.1: 917162-917218 [-] UCSC Ensembl

Seed

UCCCUUU

Precursor
(pre-Mir +30nt flank)

AGCUGGAGAGCUCCUCUGUGACCUGUGGGAUUCCCUUUGUCAUCCUAUGCCUGGAGCUCAAAUGAGGCAAGGACAGCAAAGGGGUGCUCAAUUGUCACCUCUGACUUCACUCCUUCC

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Structure

        10          20        30        40        50        
AGCUGGAGAGCUCCUCU--|    CUG    AU         CA    A     GGAGC 
                   GUGAC   UGGG  UCCCUUUGU  UCCU UGCCU     U
                   CACUG   ACUC  GGGGAAACG  AGGA ACGGA     C
CCUUCCUCACUUCAGUCUC^    UUA    GU         AC    -     GUAAA 
     110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-204-P1a_5p

mirBase accession

None

Sequence

0- UUCCCUUUGUCAUCCUAUGCCU -22

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Star sequence

Mal-Mir-204-P1a_3p*

mirBase accession

None

Sequence

36- GCAAGGACAGCAAAGGGGUGC -57

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