MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-204-P1

Family name MIR-204 (all species)
Seed UCCCUUU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-204-P2  Lch-Mir-204-P4 
Orthologues Aca-Mir-204-P1  Ami-Mir-204-P1  Bta-Mir-204-P1  Cfa-Mir-204-P1  Cli-Mir-204-P1  Cmi-Mir-204-P1  Cpi-Mir-204-P1  Cpo-Mir-204-P1  Dno-Mir-204-P1  Dre-Mir-204-P1a  Dre-Mir-204-P1b  Ebu-Mir-204  Gga-Mir-204-P1  Gja-Mir-204-P1  Gmo-Mir-204-P1a  Gmo-Mir-204-P1b  Hsa-Mir-204-P1  Loc-Mir-204-P1  Mal-Mir-204-P1b  Mdo-Mir-204-P1  Mml-Mir-204-P1  Mmu-Mir-204-P1  Mun-Mir-204-P1  Oan-Mir-204-P1  Ocu-Mir-204-P1  Pbv-Mir-204-P1  Pma-Mir-204  Rno-Mir-204-P1  Sha-Mir-204-P1  Spt-Mir-204-P1  Sto-Mir-204-P1  Tgu-Mir-204-P1  Tni-Mir-204-P1b  Xla-Mir-204-P1c  Xla-Mir-204-P1d  Xtr-Mir-204-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH126577.1: 3208970-3209027 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUCGGCACAGUGACCAUGUGACCUGUGGGUUUCCCUUUGUCAUCCUAUGCCUGGAGUUAGUAGCAAGGCAGGGACAGCAAAGGGAUGCUCAGCUGUCAUCACUGUCAUCAGCCAACUA
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Structure
        10          20        30        40        50         
CUCGGCACAGUGACCAU--|    CUG     U         CA    A     GGAGUU 
                   GUGAC   UGGGU UCCCUUUGU  UCCU UGCCU      \
                   UACUG   ACUCG AGGGAAACG  AGGG ACGGA      A
AUCAACCGACUACUGUCAC^    UCG     U         AC    -     ACGAUG 
      110       100        90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Mature sequence

Lch-Mir-204-P1_5p (predicted)

mirBase accessionNone
Sequence
0- UUCCCUUUGUCAUCCUAUGCCU -22
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Star sequence

Lch-Mir-204-P1_3p* (predicted)

mirBase accessionNone
Sequence
37- GCAGGGACAGCAAAGGGAUGC -58
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