| MirGeneDB ID | Lch-Mir-204-P4 |
|---|---|
| Family name | MIR-204 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-204-P1 Lch-Mir-204-P2 |
| Orthologues | Ami-Mir-204-P4 Cli-Mir-204-P4 Cmi-Mir-204-P4 Cpi-Mir-204-P4 Ebu-Mir-204 Gga-Mir-204-P4 Gja-Mir-204-P4 Mun-Mir-204-P4 Pbv-Mir-204-P4 Pma-Mir-204 Spt-Mir-204-P4 Sto-Mir-204-P4 Tgu-Mir-204-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126742.1: 936419-936476 [+] Ensembl |
| Seed | UCCCUUU |
| Precursor (pre-Mir +30nt flank) |
AAGCCGUGUUUGCUCCAGUGAAAUGGGGGCUUCCCUUUCUCAUCCUAUGCCUGAGAAUUCACUGAAGGCUGGGAAGGUAAAGGGAGGCUCACAUCUCACCCUGAACACCCUGCCUUUUGet precursor sequence |
| Structure | 10 20 30 40 50 AAGCCGUGUUUGCUCCA--| A G CU A U GAGAAU GUGA AUG GGGCUUCCCUUU C UCCUA GCCU \ CACU UAC CUCGGAGGGAAA G AGGGU CGGA U UUUUCCGUCCCACAAGUCC^ C A UG A - AGUCAC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-204-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCCCUUUCUCAUCCUAUGCCU -22
Get sequence
|
| Star sequence | Lch-Mir-204-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- GCUGGGAAGGUAAAGGGAGGC -58
Get sequence
|
