| MirGeneDB ID | Spt-Mir-204-P4 |
|---|---|
| Family name | MIR-204 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-204-P1 Spt-Mir-204-P2 |
| Orthologues | Ami-Mir-204-P4 Cli-Mir-204-P4 Cmi-Mir-204-P4 Cpi-Mir-204-P4 Ebu-Mir-204 Gga-Mir-204-P4 Gja-Mir-204-P4 Lch-Mir-204-P4 Mun-Mir-204-P4 Pbv-Mir-204-P4 Pma-Mir-204 Sto-Mir-204-P4 Tgu-Mir-204-P4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01004913.1: 2027000-2027057 [-] UCSC Ensembl |
| Seed | UCCCUUU |
| Precursor (pre-Mir +30nt flank) |
CCCCCCCCCCUGCCCCCGGGCCCUGUGAGCUUCCCUUUGUCAUCCUAUGCCUGAGAGUUCCCUGGAGGCUGGGACGGUGAAGGGACGCCUACGCGGCCCCCAGCAGCCAGGACAAAGAGet precursor sequence |
| Structure | 10 20 30 40 50 CCCCCCCCCCUGCCCCC--| C A U UG A U GAGAGU GGGCC UGUG GC UCCCUU UC UCCUA GCCU \ CCCGG GCAU CG AGGGAA GG AGGGU CGGA U AGAAACAGGACCGACGACC^ C C C GU C - GGUCCC 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-204-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UUCCCUUUGUCAUCCUAUGCCU -22
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|
| Star sequence | Spt-Mir-204-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
37- GCUGGGACGGUGAAGGGACGC -58
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|
