MirGeneDB

MirGeneDB ID

Cli-Mir-190-P1

Family name MIR-190 (all species)
Seed GAUAUGU
Species Rock pigeon (Columba livia)
MiRBase ID
Paralogues
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Ami-Mir-190-P1  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bta-Mir-190-P1  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cgi-Mir-190  Cpi-Mir-190-P1  Cpo-Mir-190-P1  Cte-Mir-190  Dan-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dpu-Mir-190  Dre-Mir-190-P1  Ete-Mir-190-P1  Gga-Mir-190-P1  Hme-Mir-190  Hsa-Mir-190-P1  Isc-Mir-190  Mdo-Mir-190-P1  Mml-Mir-190-P1  Mmu-Mir-190-P1  Oan-Mir-190-P1  Ocu-Mir-190-P1  Pfl-Mir-190  Pmi-Mir-190  Rno-Mir-190-P1a  Rno-Mir-190-P1b  Sha-Mir-190-P1  Sko-Mir-190  Sto-Mir-190-P1  Tca-Mir-190  Tgu-Mir-190-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(colLiv2)
scaffold87: 1114483-1114540 [-]
Precursor
(pre-Mir +30nt flank)
CCUGGAUGCCUUUUUCUGCAGGACUCUGUGUGAUAUGUUUGAUAUAUUAGGUUGUUAUUUAAUCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCUGCCCUGUCUCCGGGGGUUUU
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Structure
        10         20        30         40        50         
CCUGGAUGCCUUUUUCU-       U     U-|               UA     UUAU 
                  GCAGGAC CUGUG  GAUAUGUUUGAUAUAU  GGUUG    U
                  CGUCCUG GACAU  UUAUACAAACUAUAUA  UCAAC    U
UUUUGGGGGCCUCUGUCC       U     CC^               --     CUAA 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Cli-Mir-190-P1_5p

MirBase accessionNone
Sequence
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
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Star sequence

Cli-Mir-190-P1_3p*

MirBase accessionNone
Sequence
36- ACUAUAUAUCAAACAUAUUCCU -58
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