MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-190-P1a

Family name MIR-190 (all species)
Seed GAUAUGU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-190-P1b  Tni-Mir-190-P3 
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Ami-Mir-190-P1  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cgi-Mir-190  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cpi-Mir-190-P1  Cpo-Mir-190-P1  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Esc-Mir-190  Ete-Mir-190-P1  Gga-Mir-190-P1  Gja-Mir-190-P1  Gmo-Mir-190-P1a  Hme-Mir-190  Hsa-Mir-190-P1  Isc-Mir-190  Lch-Mir-190-P1  Loc-Mir-190-P1  Mal-Mir-190-P1a  Mdo-Mir-190-P1  Mml-Mir-190-P1  Mmu-Mir-190-P1  Mun-Mir-190-P1  Npo-Mir-190  Oan-Mir-190-P1  Obi-Mir-190  Ocu-Mir-190-P1  Ovu-Mir-190  Pbv-Mir-190-P1  Pfl-Mir-190  Pma-Mir-190-o1  Pmi-Mir-190  Sha-Mir-190-P1  Sko-Mir-190  Spt-Mir-190-P1  Sto-Mir-190-P1  Tca-Mir-190  Tgu-Mir-190-P1  Xbo-Mir-190 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
5: 2569527-2569586 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCGGAGGCCUUCUCUGCAGGGCUCUGUCUGAUAUGUUUGAUAUAUUAGGUUGUUAUUCAGUCCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCCGCUCUGUCUACAGAGUGUCUG
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Structure
        10          20        30         40        50          
CACCGGAGGCCUUCUCU--  A    U    CU-|               UA     UUAUU 
                   GC GGGC CUGU   GAUAUGUUUGAUAUAU  GGUUG     \
                   CG CCUG GACA   UUAUACAAACUAUAUA  UCAAC     C
GUCUGUGAGACAUCUGUCU  C    U    UCC^               --     CCUGA 
.       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-190-P1a_5p

mirBase accessionNone
Sequence
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
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Star sequence

Tni-Mir-190-P1a_3p*

mirBase accessionNone
Sequence
37- ACUAUAUAUCAAACAUAUUCCUA -60
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