MirGeneDB 3.0
MirGeneDB ID

Gmo-Mir-190-P1a

Family name MIR-190 (all species)
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-190a-2
Paralogues Gmo-Mir-190-P1b  Gmo-Mir-190-P3 
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Aga-Mir-190  Agr-Mir-190  Ami-Mir-190-P1  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bko-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cja-Mir-190-P1  Cli-Mir-190-P1  Cmi-Mir-190-P1  Cpi-Mir-190-P1  Cpo-Mir-190-P1  Cte-Mir-190  Dan-Mir-190  Dlo-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dpu-Mir-190  Dsi-Mir-190  Dya-Mir-190  Eba-Mir-190  Eca-Mir-190-P1  Egr-Mir-190  Esc-Mir-190  Ete-Mir-190-P1  Gga-Mir-190-P1  Gja-Mir-190-P1  Gpa-Mir-190  Gsa-Mir-190  Hme-Mir-190  Hmi-Mir-190  Hru-Mir-190  Hsa-Mir-190-P1  Isc-Mir-190  Laf-Mir-190-P1  Lch-Mir-190-P1  Loc-Mir-190-P1  Mal-Mir-190-P1a  Mdo-Mir-190-P1  Mgi-Mir-190  Mml-Mir-190-P1  Mmr-Mir-190-P1  Mmu-Mir-190-P1  Mom-Mir-190  Mun-Mir-190-P1  Neu-Mir-190-P1  Npo-Mir-190  Oan-Mir-190-P1  Obi-Mir-190  Ocu-Mir-190-P1  Ofu-Mir-190  Ovu-Mir-190  Pab-Mir-190-P1  Pau-Mir-190  Pbv-Mir-190-P1  Pca-Mir-190  Pdu-Mir-190  Pfl-Mir-190  Pma-Mir-190-o1  Pmi-Mir-190  Pve-Mir-190  Rph-Mir-190  Sha-Mir-190-P1  Sko-Mir-190  Sma-Mir-190  Snu-Mir-190  Spt-Mir-190-P1  Sto-Mir-190-P1  Tca-Mir-190  Tgu-Mir-190-P1  Tni-Mir-190-P1a  Tur-Mir-190  War-Mir-190  Xbo-Mir-190 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)		 GeneScaffold_2011: 201824-201882 [-] UCSC Ensembl
Seed GAUAUGU
Precursor
(pre-Mir +30nt flank)		 
GCCUGGAAGCCUUCGCUGCAGGGCUCUGUCUGAUAUGUUUGAUAUAUUAGGUUGUUAUUCAGUCCAACUAUAUAUCAAACAUAUUCCUACAGUGUCCCGCCCUGUCUCCAAGACGCUGU
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Structure
        10          20        30         40        50         
GCCUGGAAGCCUUCGCU--  A    U    CU-|               UA     UUAU 
                   GC GGGC CUGU   GAUAUGUUUGAUAUAU  GGUUG    U
                   CG CCUG GACA   UUAUACAAACUAUAUA  UCAAC    C
UGUCGCAGAACCUCUGUCC  C    U    UCC^               --     CUGA 
       110       100        90        80        70          60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-190-P1a_5p
mirBase accessionMIMAT0046033
Sequence 
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
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Star sequence

Gmo-Mir-190-P1a_3p*
mirBase accessionMIMAT0044253
Sequence 
36- ACUAUAUAUCAAACAUAUUCCUA -59
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