MirGeneDB 2.1

MirGeneDB ID

Cmi-Mir-190-P1

Family name MIR-190 (all species)
Seed GAUAUGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-190-P3 
Orthologues Aae-Mir-190  Aca-Mir-190-P1  Ami-Mir-190-P1  Asu-Mir-190  Bfl-Mir-190  Bge-Mir-190  Bla-Mir-190  Bpl-Mir-190  Bta-Mir-190-P1  Cbr-Mir-190  Cel-Mir-190  Cfa-Mir-190-P1  Cgi-Mir-190  Cli-Mir-190-P1  Cpi-Mir-190-P1  Cpo-Mir-190-P1  Cte-Mir-190  Dan-Mir-190  Dma-Mir-190  Dme-Mir-190  Dmo-Mir-190  Dno-Mir-190-P1  Dpu-Mir-190  Dre-Mir-190-P1b  Dsi-Mir-190  Dya-Mir-190  Esc-Mir-190  Ete-Mir-190-P1  Gga-Mir-190-P1  Gja-Mir-190-P1  Gmo-Mir-190-P1a  Gmo-Mir-190-P1b  Hme-Mir-190  Hsa-Mir-190-P1  Isc-Mir-190  Lch-Mir-190-P1  Loc-Mir-190-P1  Mal-Mir-190-P1a  Mal-Mir-190-P1b  Mdo-Mir-190-P1  Mml-Mir-190-P1  Mmu-Mir-190-P1  Mun-Mir-190-P1  Npo-Mir-190  Oan-Mir-190-P1  Obi-Mir-190  Ocu-Mir-190-P1  Ovu-Mir-190  Pbv-Mir-190-P1  Pfl-Mir-190  Pma-Mir-190-o1  Pmi-Mir-190  Rno-Mir-190-P1c  Rno-Mir-190-P1d  Sha-Mir-190-P1  Sko-Mir-190  Spt-Mir-190-P1  Sto-Mir-190-P1  Tca-Mir-190  Tgu-Mir-190-P1  Tni-Mir-190-P1a  Tni-Mir-190-P1b  Xbo-Mir-190 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635859.1: 7993179-7993236 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUGGAUGCCUGUCUUGCAAGACUCUGUGUGAUAUGUUUGAUAUAUUAGGUUGUUAUUAAAGCCAACUAUAUAUCAAACAUAUUCCUAUAGUGUCCUGCCCUGUCUCCGGGGUUCAA
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Structure
        10         20        30         40        50         
ACCUGGAUGCCUGUCUU-   A   U     U-|               UA     UUAU 
                  GCA GAC CUGUG  GAUAUGUUUGAUAUAU  GGUUG    U
                  CGU CUG GAUAU  UUAUACAAACUAUAUA  UCAAC    A
AACUUGGGGCCUCUGUCC   C   U     CC^               --     CGAA 
      110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-190-P1_5p

mirBase accessionNone
Sequence
0- UGAUAUGUUUGAUAUAUUAGGUUG -24
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Star sequence

Cmi-Mir-190-P1_3p*

mirBase accessionNone
Sequence
36- ACUAUAUAUCAAACAUAUUCCU -58
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